Browse Element(s) Details


Os.36779.1.S1_s_at

Description gb:AK059737.1
DB_XREF= gi:32969755
TID=Os.36779.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.36779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D08, full insert sequence.
FL= gb:AK062690.1 gb:AK059737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0240011/11Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os12g0233011/11Nonspecific lipid-transfer protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein
LOC_Os11g02440Os.37295.1.S1_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02440Os.6354.1.S1_s_at11/1111+728202..731757Chalcone-flavanone isomerase family protein, expressed
LOC_Os11g02450Os.37247.1.S1_at10/1111+733254..736189Elongation factor P, putative, expressed
LOC_Os11g02460OsAffx.6968.1.S1_x_at11/1111+738298..741793chloroplastic outer envelope membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005319molecular_functionlipid transporter activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36779.1.S1_s_at--505--10192Chr12:745739..745763 (25 bp)
TATATCGATCGATGCTGGCTCGCAG
LOC_Os12g02330
Os.36779.1.S1_s_at--476--512Chr12:745746..745770 (25 bp)
ATCGATGCTGGCTCGCAGTTGATCA
LOC_Os12g02330
Os.36779.1.S1_s_at--1121--612Chr12:745750..745774 (25 bp)
ATGCTGGCTCGCAGTTGATCAACTA
LOC_Os12g02330
Os.36779.1.S1_s_at--1117--4772Chr12:745756..745780 (25 bp)
GCTCGCAGTTGATCAACTAGCCAAA
LOC_Os12g02330
Os.36779.1.S1_s_at--430--4812Chr12:745919..745943 (25 bp)
GCTCTGTGTACGTGTAATCCTACGT
LOC_Os12g02330
Os.36779.1.S1_s_at--621--7072Chr12:745932..745956 (25 bp)
GTAATCCTACGTTGATGAATTGCAT
LOC_Os12g02330
Os.36779.1.S1_s_at--154--6332Chr12:745945..745969 (25 bp)
GATGAATTGCATCTTGTCCAGACTT
LOC_Os12g02330
Os.36779.1.S1_s_at--39--5212Chr12:745948..745972 (25 bp)
GAATTGCATCTTGTCCAGACTTGGA
LOC_Os12g02330
Os.36779.1.S1_s_at--119--9592Chr12:745956..745980 (25 bp)
TCTTGTCCAGACTTGGACCTAGCTA
LOC_Os12g02330
Os.36779.1.S1_s_at--429--6192Chr12:746007..746031 (25 bp)
GAGGCAATCTGTAGTAATTTCCTTG
LOC_Os12g02330
Os.36779.1.S1_s_at--843--9472Chr12:746014..746038 (25 bp)
TCTGTAGTAATTTCCTTGTTACATT
LOC_Os12g02330
Target Sequence 
TATATCGATCGATGCTGGCTCGCAGTTGATCAACTAGCCAAAATAATAGCTACAGTAAAAATAACAGCTGGGGCATATCA
TTCAGCGCTGGTCATCTCTCTCTGTATCTCTGTATACTTTATGTTGCACGCTCCGTGCGTGCATCAGCATGCTATCTTAA
TTTTCTTGAGTCTGTACNCTGCTCTGTGTACGTGTAATCCTACGTTGATGAATTGCATCTTGTCCAGACTTGGACCTAGC
TAGCTACGTACTCCAGCTTCTTGTTGCTGAGGCAATCTGTAGTAATTTCCTTGTTACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36779.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis