Browse Element(s) Details


Os.10615.1.S1_s_at

Description gb:AK058921.1
DB_XREF= gi:32968939
TID=Os.10615.1
CNT=68
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.10615 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for lipid transfer protein, b1
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-B10, full insert sequence.
FL= gb:AK058921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0237911/11Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os12g0231011/11Nonspecific lipid-transfer protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02320Os.21252.1.S1_at11/1111+662978..670704nucleotidyltransferase family protein, putative, expressed
LOC_Os11g02310OsAffx.23315.1.S1_s_at2/1111+670598..672211pentatricopeptide, putative
LOC_Os11g02330Os.37860.1.S1_at11/1111+679037..679892expressed protein
LOC_Os11g02330Os.57455.1.S1_x_at6/1111+679037..679892expressed protein
LOC_Os11g02340OsAffx.29227.2.S1_at10/1111+681453..683177hypothetical protein
LOC_Os11g02340OsAffx.29227.1.S1_s_at1/1111+681453..683177hypothetical protein
LOC_Os11g02350Os.4380.1.S1_at11/1111+683780..684610Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os11g02360OsAffx.6966.1.S1_at11/1111+685087..686482hypothetical protein
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10615.1.S1_s_at--1106--6892Chr12:732799..732823 (25 bp)
GTATCTTGTGTTATCTGTGTTTATG
LOC_Os12g02310
Os.10615.1.S1_s_at--384--10172Chr12:732800..732824 (25 bp)
TATCTTGTGTTATCTGTGTTTATGC
LOC_Os12g02310
Os.10615.1.S1_s_at--604--432Chr12:732801..732825 (25 bp)
ATCTTGTGTTATCTGTGTTTATGCT
LOC_Os12g02310
Os.10615.1.S1_s_at--316--9592Chr12:732802..732826 (25 bp)
TCTTGTGTTATCTGTGTTTATGCTG
LOC_Os12g02310
Os.10615.1.S1_s_at--907--3612Chr12:732803..732827 (25 bp)
CTTGTGTTATCTGTGTTTATGCTGA
LOC_Os12g02310
Os.10615.1.S1_s_at--441--10832Chr12:732804..732828 (25 bp)
TTGTGTTATCTGTGTTTATGCTGAA
LOC_Os12g02310
Os.10615.1.S1_s_at--902--8672Chr12:732805..732829 (25 bp)
TGTGTTATCTGTGTTTATGCTGAAT
LOC_Os12g02310
Os.10615.1.S1_s_at--408--7432Chr12:732806..732830 (25 bp)
GTGTTATCTGTGTTTATGCTGAATA
LOC_Os12g02310
Os.10615.1.S1_s_at--228--8792Chr12:732807..732831 (25 bp)
TGTTATCTGTGTTTATGCTGAATAA
LOC_Os12g02310
Os.10615.1.S1_s_at--610--6792Chr12:732808..732832 (25 bp)
GTTATCTGTGTTTATGCTGAATAAA
LOC_Os12g02310
Os.10615.1.S1_s_at--175--492Chr12:732811..732835 (25 bp)
ATCTGTGTTTATGCTGAATAAAATG
LOC_Os12g02310
Target Sequence 
GTATCTTGTGTTATCTGTGTTTATGCTGAATAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10615.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis