Browse Element(s) Details


OsAffx.31617.1.S1_x_at

Description tigr:9640.m00572
TID=OsAffx.31617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0650011/11hypothetical protein
LOC_Os11g024101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06480OsAffx.31616.1.S1_at11/1112+3117268..3121176expressed protein
LOC_Os12g06490Os.8100.1.S1_at10/1112+3127646..3130712Protein kinase domain containing protein, expressed
LOC_Os12g06490Os.8100.1.S2_at10/1112+3127646..3130712Protein kinase domain containing protein, expressed
LOC_Os12g06500OsAffx.31617.1.S1_x_at11/1112+3137359..3137851hypothetical protein
LOC_Os12g06500OsAffx.31617.1.S1_at11/1112+3137359..3137851hypothetical protein
LOC_Os12g06510Os.9447.1.S1_at11/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06510OsAffx.23885.1.S1_s_at10/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06520OsAffx.19521.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.19640.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.53732.1.S1_a_at1/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06530Os.46012.2.S1_x_at9/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.46012.3.S1_x_at6/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.27088.1.A1_x_at5/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31617.1.S1_x_at--400--12Chr12:3137423..3137447 (25 bp)
AGGAAGCTACCGAGCCAAATCCTTC
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--960--8271Chr12:3137464..3137488 (25 bp)
GGCATCGGATCTAACCACTCACAAC
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--746--2671Chr12:3137505..3137529 (25 bp)
AAGCGCCCGCATCCTGGTAGACGAG
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--394--1631Chr12:3137562..3137586 (25 bp)
AGCGGCGTGGAGCAGGGAGAGATGT
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--199--8031Chr12:3137612..3137636 (25 bp)
GGAGGGAATCTAGACGCCGCCACGT
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--985--1071Chr12:3137614..3137638 (25 bp)
AGGGAATCTAGACGCCGCCACGTCG
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--1152--9531Chr12:3137620..3137644 (25 bp)
TCTAGACGCCGCCACGTCGATGGAA
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--666--4531Chr12:3137627..3137651 (25 bp)
GCCGCCACGTCGATGGAATCAATCC
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--550--4411Chr12:3137630..3137654 (25 bp)
GCCACGTCGATGGAATCAATCCAGG
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--639--2371Chr12:3137671..3137695 (25 bp)
AAACGCGAGAGAATGAGAGAGAGAC
LOC_Os12g06500
OsAffx.31617.1.S1_x_at--1007--1391Chr12:3137701..3137722 (22 bp)
AGAAATCTGGGAGGCGATAAGGAAT
LOC_Os12g06500
Target Sequence 
AGGAAGCTACCGAGCCAAATCCTTCCACCGGAGCCGTCCCCGGCATCGGATCTAACCACTCACAACCCTCCCCGCCGTAT
CCAAGCGCCCGCATCCTGGTAGACGAGGAACTCCGTAGGGAGATGCAGAAGCGAGGGGGAGCGGCGTGGAGCAGGGAGAG
ATGTGCGGGGAGGAGAGGGACAGAGGTAGGGAGGGAATCTAGACGCCGCCACGTCGATGGAATCAATCCAGGAGGGGGCG
GCGGGGAGAAACGCGAGAGAATGAGAGAGAGACGCGAGAGAAATCTGGGAGGCGATAAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31617.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis