Browse Element(s) Details


Os.19640.1.S1_at

Description gb:AK065995.1
DB_XREF= gi:32976013
TID=Os.19640.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19640 (NCBI UniGene Cluster)
UG_TITLE=Susceptibility transcription factor RVS1 (rvs1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048G15, full insert sequence.
FL= gb:AK065995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0652010/11bZIP transcriptional activator RSG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06490Os.8100.1.S1_at10/1112+3127646..3130712Protein kinase domain containing protein, expressed
LOC_Os12g06490Os.8100.1.S2_at10/1112+3127646..3130712Protein kinase domain containing protein, expressed
LOC_Os12g06500OsAffx.31617.1.S1_x_at11/1112+3137359..3137851hypothetical protein
LOC_Os12g06500OsAffx.31617.1.S1_at11/1112+3137359..3137851hypothetical protein
LOC_Os12g06510Os.9447.1.S1_at11/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06510OsAffx.23885.1.S1_s_at10/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06520OsAffx.19521.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.19640.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.53732.1.S1_a_at1/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06530Os.46012.2.S1_x_at9/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.46012.3.S1_x_at6/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.27088.1.A1_x_at5/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06540OsAffx.19522.1.S1_at11/1112+3169550..3171222GRAS family transcription factor containing protein
LOC_Os12g06550Os.55421.1.S1_at11/1112+3174209..3177222expressed protein
LOC_Os12g06560OsAffx.31618.1.S1_at11/1112+3178993..3183721expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19640.1.S1_at--429--1571Chr12:3155329..3155698 (25 bp)
AGCTCCAAACATGAACGGGTAATCC
LOC_Os12g06520
Os.19640.1.S1_at--780--3031NONE
AATCCCTTCAATGGGTGGACTCCAA
NONE
Os.19640.1.S1_at--70--6571Chr12:3155377..3155401 (25 bp)
GATTCCGCCCTATTACACGCAACAG
LOC_Os12g06520
Os.19640.1.S1_at--463--1291Chr12:3155418..3155442 (25 bp)
AGATGCCTTATTTAGGCGGCCACCA
LOC_Os12g06520
Os.19640.1.S1_at--20--1371Chr12:3155472..3155496 (25 bp)
AGAGCTCATCAAATGGCGGCCAGTC
LOC_Os12g06520
Os.19640.1.S1_at--1062--1131Chr12:3155493..3155517 (25 bp)
AGTCGCTGAGTGGTCAGTCCCTAAA
LOC_Os12g06520
Os.19640.1.S1_at--68--9611Chr12:3155506..3155530 (25 bp)
TCAGTCCCTAAACGACTCCATGGAT
LOC_Os12g06520
Os.19640.1.S1_at--474--2371Chr12:3155566..3155590 (25 bp)
AAACCATATACCAACTGCAGCTCAG
LOC_Os12g06520
Os.19640.1.S1_at--683--1551Chr12:3155645..3155669 (25 bp)
AGCTAGCCGTTCTTTGTACCAGTAA
LOC_Os12g06520
Os.19640.1.S1_at--1159--10791Chr12:3155683..3155707 (25 bp)
TTGTATGACATAATCCTCCCTTTCC
LOC_Os12g06520
Os.19640.1.S1_at--263--10671Chr12:3155719..3155743 (25 bp)
TTCCTGGATTAATGCCTAGACTGAG
LOC_Os12g06520
Target Sequence 
AGCTCCAAACATGAACGGGTAATCCCTTCAATGGGTGGACTCCAACAGCAGATTCCGCCCTATTACACGCAACAGCAGCA
GCAGCAGCAACAGATGCCTTATTTAGGCGGCCACCATGCTCAGCAACGCCNTCCAAGCCATCAGCAGAGCTCATCAAATG
GCGGCCAGTCGCTGAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGAGGAGAAGAAACTCGGGGGCCCCTATTA
AACCATATACCAACTGCAGCTCAGCATTGTAAAGATAGCTAATGTACAATGTAATGCATATGAATCATTGAATAGGGTAG
CTAGCCGTTCTTTGTACCAGTAAACAGAAGTAATTCTTGTATGACATAATCCTCCCTTTCCCCCTNTGTTCATTCCTGGA
TTAATGCCTAGACTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis