Browse Element(s) Details


OsAffx.23885.1.S1_s_at

Description tigr:9631.m03941
TID=OsAffx.23885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2086011/11expressed protein
LOC_Os12g0651010/11Calcineurin B-like protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20800OsAffx.25171.1.S1_at11/113+11761478..11762354hypothetical protein
LOC_Os03g20810NANA3+11764459..11767748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.47463.1.S1_x_at6/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.14491.2.S1_x_at5/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20830OsAffx.12957.1.S1_at11/113+11774552..11775088hypothetical protein
LOC_Os03g20840OsAffx.25172.1.S1_at11/113+11777136..11780357NB-ARC domain containing protein, expressed
LOC_Os03g20850OsAffx.26595.1.S1_s_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20850Os.15776.1.S1_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20860OsAffx.23885.1.S1_s_at11/113+11787185..11792036expressed protein
LOC_Os03g20860Os.8860.1.S1_at11/113+11787185..11792036expressed protein
LOC_Os03g20860OsAffx.12958.1.S1_at6/113+11787185..11792036expressed protein
LOC_Os03g20870Os.19480.1.S1_at11/113+11795300..11797085Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g20880OsAffx.12959.1.S1_at11/113+11798795..11802273Pyruvate kinase, cytosolic isozyme, putative
LOC_Os03g20890OsAffx.4986.1.S1_at2/113+11810150..11813676transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006950biological_processresponse to stress
GO:0019722biological_processcalcium-mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23885.1.S1_s_at--1156--2214Chr03:22733045..22733069 (25 bp)
ACAATCGATGGGAGGGCGCGCTGAC
NONE
OsAffx.23885.1.S1_s_at--327--3993Chr03:22733091..22733115 (25 bp)
CGGGAGGACATGTGGCCAGGCGGAC
NONE
OsAffx.23885.1.S1_s_at--809--8555Chr11:25897534..25897614 (25 bp)
TGGAGTCCTTGCGACGACGGGCAAC
NONE
OsAffx.23885.1.S1_s_at--425--3414Chr03:22733253..22733277 (25 bp)
CAGCAGCAGCACGTTGCAACGGAAG
NONE
OsAffx.23885.1.S1_s_at--558--3414Chr03:22733259..22733283 (25 bp)
CAGCACGTTGCAACGGAAGCAGCAA
NONE
OsAffx.23885.1.S1_s_at--892--5054Chr03:22733311..22733335 (25 bp)
GCAGCAGCAGCTCACTACAGGCCTG
NONE
OsAffx.23885.1.S1_s_at--815--9694Chr03:22733322..22733346 (25 bp)
TCACTACAGGCCTGCAGCGAGAGCA
NONE
OsAffx.23885.1.S1_s_at--931--2014Chr03:22733324..22733348 (25 bp)
ACTACAGGCCTGCAGCGAGAGCAGC
NONE
OsAffx.23885.1.S1_s_at--504--5074Chr03:22733347..22733371 (25 bp)
GCAGCTGCAACAACTCCCTACGATA
NONE
OsAffx.23885.1.S1_s_at--25--5154Chr03:22733353..22733377 (25 bp)
GCAACAACTCCCTACGATAGCAGCA
NONE
OsAffx.23885.1.S1_s_at--856--1054Chr03:22733389..22733413 (25 bp)
AGGTGGTAGGGCTGCAGCAAGAGCA
NONE
Target Sequence 
ACAATCGATGGGAGGGCGCGCTGACGGGCGGCGTGTCGGCGGACGACGGGAGGACATGTGGCCAGGCGGACAGCGGACGG
CGACCGGCGTGCATGTCGGCGGTGGTTGGAGTCCTTGCGACGACGGGCAACGGGGCCGCCGCGATAGCAGCAGCAGCACG
TTGCAACGGAAGCAGCAACGCTCGCGGCTGCAGCACGAGCACGCGGCAGCAGCAGCTCACTACAGGCCTGCAGCGAGAGC
AGCAGCTGCAACAACTCCCTACGATAGCAGCAGCAAGCCAGCAAGGTGGTAGGGCTGCAGCAAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23885.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis