Browse Element(s) Details


OsAffx.25171.1.S1_at

Description tigr:9631.m02068
TID=OsAffx.25171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2080011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20780Os.12691.1.A1_a_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.3.S1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.1.A1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.2.S1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.3.S1_x_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_x_at5/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.4.S1_at1/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20800OsAffx.25171.1.S1_at11/113+11761478..11762354hypothetical protein
LOC_Os03g20810NANA3+11764459..11767748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.47463.1.S1_x_at6/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.14491.2.S1_x_at5/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20830OsAffx.12957.1.S1_at11/113+11774552..11775088hypothetical protein
LOC_Os03g20840OsAffx.25172.1.S1_at11/113+11777136..11780357NB-ARC domain containing protein, expressed
LOC_Os03g20850OsAffx.26595.1.S1_s_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20850Os.15776.1.S1_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20860OsAffx.23885.1.S1_s_at11/113+11787185..11792036expressed protein
LOC_Os03g20860Os.8860.1.S1_at11/113+11787185..11792036expressed protein
LOC_Os03g20860OsAffx.12958.1.S1_at6/113+11787185..11792036expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25171.1.S1_at--867--411Chr03:11762028..11762319 (25 bp)
ATCATGGTGGGTGCGTCCTCGACAA
LOC_Os03g20800
OsAffx.25171.1.S1_at--490--8651Chr03:11761942..11761966 (25 bp)
TGGGCTCCATCTCTGTTGTCCGTGA
LOC_Os03g20800
OsAffx.25171.1.S1_at--716--9471Chr03:11761931..11761955 (25 bp)
TCTGTTGTCCGTGAGCTAGAGCTTG
LOC_Os03g20800
OsAffx.25171.1.S1_at--884--8911Chr03:11761908..11761932 (25 bp)
TGAGCTGTTGTTGAGCCTTGGTGCT
LOC_Os03g20800
OsAffx.25171.1.S1_at--675--8611Chr03:11761890..11761914 (25 bp)
TGGTGCTACCTCCACGAGACCAGTG
LOC_Os03g20800
OsAffx.25171.1.S1_at--73--6011Chr03:11761875..11761899 (25 bp)
GAGACCAGTGTTTCGCCGCATCGGC
LOC_Os03g20800
OsAffx.25171.1.S1_at--732--8291Chr03:11761853..11761877 (25 bp)
GGCTTCTACCAACGGCTTGGGAAGA
LOC_Os03g20800
OsAffx.25171.1.S1_at--989--8491Chr03:11761818..11761842 (25 bp)
TGGCAGCCTTGCAGTCGATGACATC
LOC_Os03g20800
OsAffx.25171.1.S1_at--1012--4551Chr03:11761697..11761721 (25 bp)
GCGCCATCTCTACATGCGCTGATGA
LOC_Os03g20800
OsAffx.25171.1.S1_at--288--713Chr10:6048801..6048917 (25 bp)
ATGATGTGCCACATCAGCCGAAACC
NONE
OsAffx.25171.1.S1_at--1124--5531Chr03:11761508..11761532 (25 bp)
GAAACCACCGTCCAAACTATCTCAG
LOC_Os03g20800
Target Sequence 
ATCATGGTGGGTGCGTCCTCGACAAGAAGCAGGCCGCTGCTCCGATTCGGTAGCCGTCCCCAAGCCCCATCTCCGCCACC
CTTCCCTGGGCTCCATCTCTGTTGTCCGTGAGCTAGAGCTTGAGCTGTTGTTGAGCCTTGGTGCTACCTCCACGAGACCA
GTGTTTCGCCGCATCGGCTTCTACCAACGGCTTGGGAAGAAGCGGTTGAGTGGCAGCCTTGCAGTCGATGACATCGACCA
CGACGACAGCACCACCGTCTGCAGCTGGAAGTCGGCGGGATGGCGCAACGGGACTGGGGCCACGAGGAGGAAGCAGACAG
CGGCGGCGAGGGCGCCATCTCTACATGCGCTGATGACCATGAGGAAAGGGAGAGAGGAGGGGAAAGAGGGGGTTGATGAT
GTGCCACATCAGCCGAAACCACCGTCCAAACTATCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis