Browse Element(s) Details


Os.12691.2.S1_a_at

Description gb:AK103227.1
DB_XREF= gi:32988436
TID=Os.12691.2
CNT=214
FEA=FLmRNA
TIER=FL+Stack
STK=47
UG=Os.12691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsEIL1 mRNA for ethylene-insensitive-3-like protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123C05, full insert sequence.
FL= gb:AK060826.1 gb:AK103227.1 gb:AK098987.1 gb:AK098905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2079011/11ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20760Os.55458.1.S1_at10/113+11730705..11732232Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g20770OsAffx.12956.1.S1_at11/113+11733805..11735597hypothetical protein
LOC_Os03g20780Os.12691.1.A1_a_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.3.S1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.1.A1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.2.S1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.3.S1_x_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_x_at5/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.4.S1_at1/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20800OsAffx.25171.1.S1_at11/113+11761478..11762354hypothetical protein
LOC_Os03g20810NANA3+11764459..11767748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.47463.1.S1_x_at6/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.14491.2.S1_x_at5/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20830OsAffx.12957.1.S1_at11/113+11774552..11775088hypothetical protein
LOC_Os03g20840OsAffx.25172.1.S1_at11/113+11777136..11780357NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12691.2.S1_a_at--345--5871Chr03:11756878..11756902 (25 bp)
GAGCACCTTAAGCTTTTAAAGTTCA
LOC_Os03g20790
Os.12691.2.S1_a_at--976--10471Chr03:11756893..11756917 (25 bp)
TTAAAGTTCACCATGGTCATCCCTC
LOC_Os03g20790
Os.12691.2.S1_a_at--275--9611Chr03:11756909..11756933 (25 bp)
TCATCCCTCTGCTTCCATGGTGGAA
LOC_Os03g20790
Os.12691.2.S1_a_at--36--8631Chr03:11756926..11756950 (25 bp)
TGGTGGAAGCGTCTCCTGTGAACCC
LOC_Os03g20790
Os.12691.2.S1_a_at--550--7171Chr03:11756936..11756960 (25 bp)
GTCTCCTGTGAACCCGGTAATTCTA
LOC_Os03g20790
Os.12691.2.S1_a_at--713--7831Chr03:11756951..11756975 (25 bp)
GGTAATTCTATAGGTCTTTCTCATA
LOC_Os03g20790
Os.12691.2.S1_a_at--339--7811Chr03:11756963..11756987 (25 bp)
GGTCTTTCTCATATAGGTTTTGCAT
LOC_Os03g20790
Os.12691.2.S1_a_at--665--2951Chr03:11756997..11757021 (25 bp)
AATGGCTGGAACTTGGAACTGGTTT
LOC_Os03g20790
Os.12691.2.S1_a_at--904--7871Chr03:11757017..11757041 (25 bp)
GGTTTATACATGTATGTCCGTCCAG
LOC_Os03g20790
Os.12691.2.S1_a_at--563--751Chr03:11757026..11757050 (25 bp)
ATGTATGTCCGTCCAGCCAGTAAAC
LOC_Os03g20790
Os.12691.2.S1_a_at--1042--4411Chr03:11757041..11757065 (25 bp)
GCCAGTAAACCTCCTATGGAAACTT
LOC_Os03g20790
Target Sequence 
GAGCACCTTAAGCTTTTAAAGTTCACCATGGTCATCCCTCTGCTTCCATGGTGGAAGCGTCTCCTGTGAACCCGGTAATT
CTATAGGTCTTTCTCATATAGGTTTTGCATTAGTTGCAAAATGGCTGGAACTTGGAACTGGTTTATACATGTATGTCCGT
CCAGCCAGTAAACCTCCTATGGAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12691.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis