Browse Element(s) Details

OsAffx.4986.1.S1_at

Description

tigr:9634.m03104
TID=OsAffx.4986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33120	11/11	transposon MuDR, putative
LOC_Os03g20890	2/11	transposon protein, putative, Mutator sub-class

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33070	OsAffx.25936.7.S1_s_at	8/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_s_at	7/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.5.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.2.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_at	1/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33080	Os.11554.1.S1_at	11/11	6	+	19257150..19258379	Peroxidase family protein, expressed
LOC_Os06g33090	Os.47413.1.S1_x_at	3/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33090	Os.11554.1.S1_at	1/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33100	Os.47413.1.S1_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33100	Os.47413.1.S1_x_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33110	OsAffx.20673.1.A1_x_at	2/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20689.1.A1_x_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20673.1.A1_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33120	OsAffx.4986.1.S1_at	11/11	6	+	19280461..19281364	transposon MuDR, putative
LOC_Os06g33130	NA	NA	6	+	19283976..19284290	hypothetical protein
LOC_Os06g33140	OsAffx.26617.4.S1_x_at	8/11	6	+	19286392..19287540	hypothetical protein
LOC_Os06g33150	Os.46314.2.S1_x_at	2/11	6	+	19291435..19297893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33150	OsAffx.22896.1.S1_x_at	1/11	6	+	19291435..19297893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33160	Os.14491.2.S1_x_at	5/11	6	+	19299327..19304223	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33160	Os.47463.1.S1_x_at	4/11	6	+	19299327..19304223	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4986.1.S1_at--47--343	2	Chr06:19280648..19280672 (25 bp)	CAGACTCTGATTATAGGCAGCCTAT	LOC_Os06g33120
OsAffx.4986.1.S1_at--887--609	1	Chr06:19280765..19280785 (21 bp)	GAGTGCATAGCAACCAGGCTGGACT	LOC_Os06g33120
OsAffx.4986.1.S1_at--383--391	1	Chr06:19281002..19281024 (23 bp)	CTGGACTCTTAAGGGCAGCGGCTGA	LOC_Os06g33120
OsAffx.4986.1.S1_at--358--163	1	Chr06:19281016..19281040 (25 bp)	AGCGGCTGAGCTTATCCCTAGAGTA	LOC_Os06g33120
OsAffx.4986.1.S1_at--155--117	3	Chr06:19281132..19281156 (25 bp)	AGTCATCTTGTAGGGAGCTTTTCAA	LOC_Os06g33120
OsAffx.4986.1.S1_at--300--147	2	Chr06:19281166..19281190 (25 bp)	AGCAAAGCTAGCACAAGACACCCCT	LOC_Os06g33120
OsAffx.4986.1.S1_at--543--275	1	Chr06:19281180..19281204 (25 bp)	AAGACACCCCTCAAGGAGCTAAGGA	LOC_Os06g33120
OsAffx.4986.1.S1_at--825--95	1	Chr06:19281201..19281225 (25 bp)	AGGACATGATGACCACCGCACTTGA	LOC_Os06g33120
OsAffx.4986.1.S1_at--16--109	1	Chr06:19281236..19281260 (25 bp)	AGGGCATTCTTTCAGCTAGGGTCCA	LOC_Os06g33120
OsAffx.4986.1.S1_at--895--481	1	Chr06:19281250..19281274 (25 bp)	GCTAGGGTCCAATTGTGAATCCGTT	LOC_Os06g33120
OsAffx.4986.1.S1_at--299--327	3	Chr06:19281280..19281304 (25 bp)	CAACATGTGTGAGTCTTTCAACAAC	LOC_Os06g33120

Target Sequence

CAGACTCTGATTATAGGCAGCCTATAGAGCAAAATAGCTCTGATAATGATGAGGAAGCTGAACAACTTTGGAAATTTGCA
AAGGAAATCAAGAGAAACATCAGGGCAAGGAAGCTAGGAGTGCATAGCAACCAGGCTGGACTCTTAAGGGCAGCGGCTGA
GCTTATCCCTAGAGTAGAACATAGGATATGTGCAAGGCATATATATGCAAACTGGAGGAAAAGGTACACTAATCAGAAGC
TTCAGAAAAAGTTTTGGAACTGTACAAAGTCATCTTGTAGGGAGCTTTTCAACTACAATAGAGCAAAGCTAGCACAAGAC
ACCCCTCAAGGAGCTAAGGACATGATGACCACCGCACTTGAACATTGGAGCAGGGCATTCTTTCAGCTAGGGTCCAATTG
TGAATCCGTTAATAACAACATGTGTGAGTCTTTCAACAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis