Browse Element(s) Details

OsAffx.20673.1.A1_at

Description

gb:NM_195160.1
DB_XREF= gi:37531679
TID=OsAffx.20673.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0047G15.12), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33110	1/11	hypothetical protein
LOC_Os06g03370	1/11	retrotransposon protein, putative, Ty1-copia subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33050	Os.10827.1.S1_x_at	9/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	Os.46055.2.S1_x_at	4/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	OsAffx.18122.1.S1_x_at	1/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33060	OsAffx.13833.1.S1_x_at	11/11	6	+	19250252..19250948	hypothetical protein
LOC_Os06g33070	OsAffx.25936.7.S1_s_at	8/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_s_at	7/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.5.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.2.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_at	1/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33080	Os.11554.1.S1_at	11/11	6	+	19257150..19258379	Peroxidase family protein, expressed
LOC_Os06g33090	Os.47413.1.S1_x_at	3/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33090	Os.11554.1.S1_at	1/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33100	Os.47413.1.S1_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33100	Os.47413.1.S1_x_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33110	OsAffx.20673.1.A1_x_at	2/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20689.1.A1_x_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20673.1.A1_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33120	OsAffx.4986.1.S1_at	11/11	6	+	19280461..19281364	transposon MuDR, putative
LOC_Os06g33130	NA	NA	6	+	19283976..19284290	hypothetical protein
LOC_Os06g33140	OsAffx.26617.4.S1_x_at	8/11	6	+	19286392..19287540	hypothetical protein
LOC_Os06g33150	Os.46314.2.S1_x_at	2/11	6	+	19291435..19297893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33150	OsAffx.22896.1.S1_x_at	1/11	6	+	19291435..19297893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33160	Os.14491.2.S1_x_at	5/11	6	+	19299327..19304223	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33160	Os.47463.1.S1_x_at	4/11	6	+	19299327..19304223	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.20673.1.A1_at--172--773	15	Chr04:2628963..2629156 (25 bp)	GGGGTTTTGTTCCTCTCGATCTCCT	NONE
OsAffx.20673.1.A1_at--301--931	4	Chr10:5177922..5177946 (25 bp)	TCCCCTCAAGAAACAAAGAAATCCG	NONE
OsAffx.20673.1.A1_at--555--551	4	Chr10:5177913..5177937 (25 bp)	GAAACAAAGAAATCCGTTGAGTATT	NONE
OsAffx.20673.1.A1_at--379--605	2	Chr10:5177848..5177872 (25 bp)	GAGTTCGATTTCTTCCCGAATCGAT	NONE
OsAffx.20673.1.A1_at--723--653	4	Chr06:19274402..19274425 (24 bp)	GATTTCTTCCCGAATCGATTCCTCC	LOC_Os06g33110
OsAffx.20673.1.A1_at--1062--639	4	Chr12:13918452..13918476 (25 bp)	GATCTCTTCGATCCAATGCCATATA	NONE
OsAffx.20673.1.A1_at--433--303	2	Chr10:5177791..5177815 (25 bp)	AATGCCATATAAAGCTTCTCCTTGT	NONE
OsAffx.20673.1.A1_at--1030--443	2	Chr10:5177788..5177812 (25 bp)	GCCATATAAAGCTTCTCCTTGTTCT	NONE
OsAffx.20673.1.A1_at--878--719	3	Chr06:18060404..18060428 (25 bp)	GTCGTGCACCGTTTGCCGTAGTGGT	NONE
OsAffx.20673.1.A1_at--1146--335	3	Chr06:18060410..18060434 (25 bp)	CACCGTTTGCCGTAGTGGTGAGTAC	NONE
OsAffx.20673.1.A1_at--710--841	3	Chr10:5177418..5177442 (25 bp)	GGCCGATCGCTCTAGCGCCGGCGAG	NONE

Target Sequence

GGGGTTTTGTTCCTCTCGATCTCCTCTTTCTTTCCCCTCAAGAAACAAAGAAATCCGTTGAGTATTNTCTCCGAATCGAA
TTCGTTTTGTTTTATCCCTAAAAACCGAGTTCGATTTCTTCCCGAATCGATTCCTCCNGTTTGGAGCTCGATCTCTTCGA
TCCAATGCCATATAAAGCTTCTCCTTGTTCTNCTCTTCCGTTTGCCCCCTTTCCCGAGCTCTCCCGTGCCTCCTAGCGCC
GCCGCGACGTGCTCCAAGTTCGCCGCCGCCGCCGGCCGTCTTCGGCAACGCCGCCGCGCCGTCTCCGCCGTCGCCGCCGC
TCGCCGTTGCCGCCGATAGGTGCGCCGTGGTGAGAGGAAGCCCGGCCGCCCCTCCTCTCTCGCCGCCGACCACCGGAGCC
CGCTCGCCGCCGTCGACCCGAACCGCCGCCGCCTTCCTCCTCGTCGCCGGCCGCCGTCGTGCACCGTTTGCCGTAGTGGT
GAGTACCAACGGGTTCGCCTCGTTGCCCTCTACGCGTAGATGCCCTCCAATCGCCCGGCCGATCGCTCTAGCGCCGGCGA
G

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis