Browse Element(s) Details


OsAffx.26617.4.S1_x_at

Description tigr:9632.m05415
TID=OsAffx.26617.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5563011/11hypothetical protein
LOC_Os04g438108/11hypothetical protein
LOC_Os06g331408/11hypothetical protein
LOC_Os01g583004/11hypothetical protein
LOC_Os07g102901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed
LOC_Os04g55600Os.23067.1.S1_at11/114+32882540..32883372expressed protein
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26617.4.S1_x_at--659--4910Chr12:774516..774540 (25 bp)
ATCGGCGTCGTGGACGGTGGTCGGC
NONE
OsAffx.26617.4.S1_x_at--202--93510Chr12:774575..774599 (25 bp)
TCGCGGTAGCACTTGACGTCGTAGC
NONE
OsAffx.26617.4.S1_x_at--199--78511Chr12:774579..774603 (25 bp)
GGTAGCACTTGACGTCGTAGCTCAT
NONE
OsAffx.26617.4.S1_x_at--1037--14910Chr12:774582..774606 (25 bp)
AGCACTTGACGTCGTAGCTCATACG
NONE
OsAffx.26617.4.S1_x_at--368--107511Chr12:774587..774611 (25 bp)
TTGACGTCGTAGCTCATACGCATAT
NONE
OsAffx.26617.4.S1_x_at--1054--18913Chr12:774590..774614 (25 bp)
ACGTCGTAGCTCATACGCATATACG
NONE
OsAffx.26617.4.S1_x_at--134--9951Chr04:32895887..32896094 (25 bp)
TACGCATATACGCTGGCGGAGGAGT
LOC_Os04g55630
OsAffx.26617.4.S1_x_at--152--40912Chr04:4492337..4492388 (25 bp)
CGAGCGCGGCGGTGGGCAAAGCAGC
NONE
OsAffx.26617.4.S1_x_at--26--101114Chr08:24435615..24435639 (25 bp)
TAGGCGAAGCGGAAGACAGTGGATG
NONE
OsAffx.26617.4.S1_x_at--695--4052Chr04:25722334..25722406 (25 bp)
CGATGCTAGGAGAGGCATCACCGGC
LOC_Os04g43810
OsAffx.26617.4.S1_x_at--323--1251Chr04:32895638..32895662 (25 bp)
AGATTGTTTATTGGTCGCCGGCCGC
LOC_Os04g55630
Target Sequence 
ATCGGCGTCGTGGACGGTGGTCGGCGNNGGCGCGGTGNCCCTCGNCNTCTTCGCCGACTTCGCGGTAGCACTTGACGTCG
TAGCTCATACGCATATACGCTGGCGGAGGAGTGCGGATGCGGGGGGTGCAGCGGAAGGCGAGCGCGGCGGAAGAGCGGCG
GCGGGCGAGCGCGGCGGTGGGCAAAGCAGCGGAAGGCGAGCTAGGCGAAGCGGAAGACAGTGGATGGGACGAGGAGCTCC
CCCGTGCTCGGCCGCCACCACCGCTGTGCCCCCGCGGGTGCCCGACGATGCTAGGAGAGGCATCACCGGCGGGAGAAGGG
GAAGAGGCAGAGGAAGAGATTGTTTATTGGTCGCCGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26617.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis