Browse Element(s) Details


Os.12701.1.S2_at

Description gb:AK071913.1
DB_XREF= gi:32981936
TID=Os.12701.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for oryzain alpha, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065M08, full insert sequence.
FL= gb:AK071913.1 gb:AK098910.1 gb:D90406.1 gb:AK061729.1 gb:AK121500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5565011/11Low-temperature-induced cysteine proteinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55600Os.23067.1.S1_at11/114+32882540..32883372expressed protein
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12701.1.S2_at--1014--3831Chr04:32904907..32904931 (25 bp)
CTGCTGCTGCATCTACGAGTATGGC
LOC_Os04g55650
Os.12701.1.S2_at--811--9131Chr04:32904834..32904858 (25 bp)
TGCGATGATCACTACAGCTGCTGCC
LOC_Os04g55650
Os.12701.1.S2_at--124--8171Chr04:32904681..32904801 (25 bp)
GGAACCTGCCTCATGGCTAAGGACA
LOC_Os04g55650
Os.12701.1.S2_at--990--5291Chr04:32904643..32904667 (25 bp)
GAAGGCTCTGAAGCGTACCCTGGCA
LOC_Os04g55650
Os.12701.1.S2_at--483--2511Chr04:32904612..32904636 (25 bp)
AACTTGTCTTTCTTGTTTGGCAACG
LOC_Os04g55650
Os.12701.1.S2_at--471--10511Chr04:32904562..32904586 (25 bp)
TTCAGAACCGTATCAGACCGTCCAG
LOC_Os04g55650
Os.12701.1.S2_at--243--5871Chr04:32904538..32904562 (25 bp)
GAGCCAGCGTGGTTGCATCATCAAA
LOC_Os04g55650
Os.12701.1.S2_at--278--5451Chr04:32904469..32904493 (25 bp)
GAACCCTGCGCACTAAGTATATCTG
LOC_Os04g55650
Os.12701.1.S2_at--1011--1551Chr04:32904346..32904370 (25 bp)
AGCTAGGTTTGCTCCTAAGCTCCTA
LOC_Os04g55650
Os.12701.1.S2_at--765--9791Chr04:32904331..32904355 (25 bp)
TAAGCTCCTAGATGCCAGTTCGACG
LOC_Os04g55650
Os.12701.1.S2_at--783--7811Chr04:32904276..32904300 (25 bp)
GGTCATTGCCATATTAATCCATCAT
LOC_Os04g55650
Target Sequence 
CTGCTGCTGCATCTACGAGTATGGCAAATACTGCTACGCCTGGGGCTGCTGCCCACTCGAGGGCGCCACCTGCTGCGATG
ATCACTACAGCTGCTGCCCTCACGAGTACCCCATCTGCAATGTTCAGCAGGGAACCTGCCTCATGGCTAAGGACAGTCCA
CTGGCAGTGAAGGCTCTGAAGCGTACCCTGGCAAAGCCAAACTTGTCTTTCTTGTTTGGCAACGGCAAGAAGAGCAGCGC
TTGAGCAATTTCAGAACCGTATCAGACCGTCCAGAGCCAGCGTGGTTGCATCATCAAATGATCAGCTGGTAACTGACGAA
GACGATTGCGCAGCTCGGCGGCGAACCCTGCGCACTAAGTATATCTGCTTTTATAATAGATTTCTCGTGTACATAAAATC
TAAAAAAACGGGTTCAGTTGGTTACAGAACTGCCAAATTTGCTTCTGAATGTATATGTAAAATTCAGCTAGGTTTGCTCC
TAAGCTCCTAGATGCCAGTTCGACGGAACTGCAAATTGATATTGGAACAAGATAAGGTCATTGCCATATTAATCCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12701.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis