Browse Element(s) Details


Os.329.1.S1_at

Description gb:AK062726.1
DB_XREF= gi:32972744
TID=Os.329.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D09, full insert sequence.
FL= gb:AK062726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5567010/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.329.1.S1_at--277--7831Chr04:32918418..32918442 (25 bp)
GGTCAGCACTAGAGGCCATTTTTTG
LOC_Os04g55670
Os.329.1.S1_at--540--9551Chr04:32918361..32918385 (25 bp)
TCTATATGGCTCACTAGATCTGCCC
LOC_Os04g55670
Os.329.1.S1_at--687--10031Chr04:32918347..32918371 (25 bp)
TAGATCTGCCCCAAGTACTTCACTG
LOC_Os04g55670
Os.329.1.S1_at--946--7011Chr04:32918333..32918357 (25 bp)
GTACTTCACTGATGCATCTATGCCT
LOC_Os04g55670
Os.329.1.S1_at--562--7791Chr04:32918304..32918328 (25 bp)
GGTGCCAAACGCTCTCAAGTAACAT
LOC_Os04g55670
Os.329.1.S1_at--831--7051Chr04:32918276..32918300 (25 bp)
GTAACTCAGCTCAGATTATTTCTCT
LOC_Os04g55670
Os.329.1.S1_at--33--4591Chr04:32918200..32918224 (25 bp)
GCGCATATTTTGTACCACCGTGTAA
LOC_Os04g55670
Os.329.1.S1_at--515--3131Chr04:32918160..32918184 (25 bp)
AATTATATGTGCCATCTGTCCCTTG
LOC_Os04g55670
Os.329.1.S1_at--395--3891Chr04:32918145..32918169 (25 bp)
CTGTCCCTTGTCTGGTAGATAGCAA
LOC_Os04g55670
Os.329.1.S1_at--26--1751Chr04:32918035..32918059 (25 bp)
ACCATTGGTTGTATACTCGTCTGAA
LOC_Os04g55670
Os.329.1.S1_at--735--2451Chr04:32918005..32918029 (25 bp)
AACAATCCATTTTTCATTCTCCTCC
NONE
Target Sequence 
GGTCAGCACTAGAGGCCATTTTTTGTTGGAAAATAGAAATCAGATCGAAACCATACCTCTATATGGCTCACTAGATCTGC
CCCAAGTACTTCACTGATGCATCTATGCCTCGTCGGTGCCAAACGCTCTCAAGTAACATAATGTAACTCAGCTCAGATTA
TTTCTCTGGACTCTACAGAAACCATAGACAGTACATGTAATCTTGGGGATAAATCACCGCGCATATTTTGTACCACCGTG
TAAAATAGATAAAAGTTTAATTATATGTGCCATCTGTCCCTTGTCTGGTAGATAGCAAATTAGGCATATTGTTTTTGTGT
AATATAGATCAGAGCAGGGACTTTTAAAAACGAATTGATGTGGTGTGGGTAACTGGGAGTTAAACCATTGGTTGTATACT
CGTCTGAAATAATAACAATCCATTTTTCATTCTCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis