Browse Element(s) Details


Os.27113.1.S1_at

Description gb:AK066690.1
DB_XREF= gi:32976708
TID=Os.27113.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-312-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074C08, full insert sequence.
FL= gb:AK066690.1 gb:AK104273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5569011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27113.1.S1_at--539--1451Chr04:32929649..32929673 (25 bp)
AGAAGTTCATGCAAGGTTCCCTTTA
LOC_Os04g55690
Os.27113.1.S1_at--1041--7891Chr04:32929663..32929687 (25 bp)
GGTTCCCTTTATAGAAGTGCCATGG
LOC_Os04g55690
Os.27113.1.S1_at--195--5391Chr04:32929779..32929798 (20 bp)
GAAGCAATCTTACCTAGCAAATCTT
LOC_Os04g55690
Os.27113.1.S1_at--690--5131Chr04:32929790..32929814 (25 bp)
GCAAATCTTGCCTTATATCCTGGAA
LOC_Os04g55690
Os.27113.1.S1_at--990--951Chr04:32929814..32929838 (25 bp)
AGGACTGAACTACCATTCTTGCCAG
LOC_Os04g55690
Os.27113.1.S1_at--1115--1551Chr04:32929837..32930117 (25 bp)
AGCTAACACGCAGGCCCTAATATTG
LOC_Os04g55690
Os.27113.1.S1_at--912--7671Chr04:32930169..32930190 (22 bp)
GGGTTCACTAATCTTGATCAGGCAT
LOC_Os04g55690
Os.27113.1.S1_at--6--7991Chr04:32930653..32930677 (25 bp)
GGATGCTACATTGTCAAAGTCGTAA
LOC_Os04g55690
Os.27113.1.S1_at--475--5171Chr04:32930712..32930736 (25 bp)
GCAATTGGCCAAACTGTCACGAGAG
LOC_Os04g55690
Os.27113.1.S1_at--581--9891Chr04:32930894..32930918 (25 bp)
TACTTCTTGTAACCAGTCACTGTTG
LOC_Os04g55690
Os.27113.1.S1_at--999--7091Chr04:32930909..32930933 (25 bp)
GTCACTGTTGGCTGAATGAATCACA
LOC_Os04g55690
Target Sequence 
AGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATAT
CCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGC
AGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATG
CTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGA
TGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTT
GACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACT
TCTTGTAACCAGTCACTGTTGGCTGAATGAATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis