Browse Element(s) Details


Os.5551.1.S1_at

Description gb:AK120939.1
DB_XREF= gi:37990562
TID=Os.5551.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037B01, full insert sequence.
FL= gb:AK120939.1 gb:AK061345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5572010/11D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5551.1.S1_at--471--571Chr04:32950386..32950410 (25 bp)
ATCCTTTGCAGGCAGGTCGATCAAC
LOC_Os04g55720
Os.5551.1.S1_at--753--371Chr04:32950405..32950429 (25 bp)
ATCAACCTGGTATGATCGGCGCAGT
LOC_Os04g55720
Os.5551.1.S1_at--231--6411Chr04:32950418..32950442 (25 bp)
GATCGGCGCAGTAGGAAGTGTCCTT
LOC_Os04g55720
Os.5551.1.S1_at--591--7411Chr04:32950474..32950498 (25 bp)
GTGTTGGAAGAATCGCTCCTCGCAA
LOC_Os04g55720
Os.5551.1.S1_at--364--4991Chr04:32950499..32950523 (25 bp)
GCATGCCGTCATGGCGATTGGTGTT
LOC_Os04g55720
Os.5551.1.S1_at--20--5391Chr04:32950578..32950602 (25 bp)
GAAGAATTCGTTTTCCTCAAGCTCT
LOC_Os04g55720
Os.5551.1.S1_at--1131--3731Chr04:32950593..32950617 (25 bp)
CTCAAGCTCTAGATTCATGCGTTGT
LOC_Os04g55720
Os.5551.1.S1_at--1088--952Chr04:32950681..32950705 (25 bp)
AGGACTGATGGTTCTCGTTGGAATA
LOC_Os04g55720
Os.5551.1.S1_at--409--4451Chr04:32950707..32950731 (25 bp)
GCCTTTTTTGGGTTATGGTGCTGTT
LOC_Os04g55720
Os.5551.1.S1_at--648--7212Chr04:32950733..32950757 (25 bp)
GTCGAGTTTGATGCAGTGTCTTGAT
LOC_Os04g55720
Os.5551.1.S1_at--90--9311NONE
TCCCATTTTTGCTTTTAGGCTTTGT
NONE
Target Sequence 
ATCCTTTGCAGGCAGGTCGATCAACCTGGTATGATCGGCGCAGTAGGAAGTGTCCTTGGTGAGGAGAATGTTAATGTCAG
TTTCATGAGTGTTGGAAGAATCGCTCCTCGCAAGCATGCCGTCATGGCGATTGGTGTTGATGAGGAACCTAAAAAGAGCA
CACTGACAAAGATTGGGGAGATTCCGGCGATTGAAGAATTCGTTTTCCTCAAGCTCTAGATTCATGCGTTGTATGTTTGA
AGCTGCAAACATGGTGTGCAATTTTGATGTAGCTAGCTATTTAATCAGGATCTAGAGGACTGATGGTTCTCGTTGGAATA
AGCCTTTTTTGGGTTATGGTGCTGTTTGTCGAGTTTGATGCAGTGTCTTGATTAATCTGGCTTAGGTTTGAACATGGTGC
TTATTAATAAGAAGCCCTCTGTTAATCTANNNNNANTGTGTTTTATGTGAAATATTTTTTGCTTCCCATTTTTGCTTTTA
GGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis