Browse Element(s) Details


Os.12617.1.S1_at

Description gb:AK064480.1
DB_XREF= gi:32974498
TID=Os.12617.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-A09, full insert sequence.
FL= gb:AK064480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g557301/11Alpha-N-acetylglucosaminidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004561molecular_functionalpha-N-acetylglucosaminidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12617.1.S1_at--310--1571Chr04:32951762..32951784 (23 bp)
AGCTAGCCTGCTTCGTGATTATGCA
LOC_Os04g55730
Os.12617.1.S1_at--99--352Chr04:24762363..24762552 (25 bp)
ATAAATACTGGAGCGGCCTGCTGCG
NONE
Os.12617.1.S1_at--906--3831Chr04:32951638..32951662 (25 bp)
CTGCTGCGAGACTACTATGGACCAA
NONE
Os.12617.1.S1_at--794--2871Chr04:32951615..32951639 (25 bp)
AAGGGCTGCCATCTACTTCAAGTAC
NONE
Os.12617.1.S1_at--781--3431Chr04:32951459..32951483 (25 bp)
CATCTCCCGGACACTTTACAAGAAG
NONE
Os.12617.1.S1_at--775--2731Chr04:32951440..32951464 (25 bp)
AAGAAGTACCTGCACGACGCTGACT
NONE
Os.12617.1.S1_at--114--6651Chr04:32951349..32951373 (25 bp)
GTTGTTGCAGCTGTAATGCCTTCTT
NONE
Os.12617.1.S1_at--223--7451Chr04:32951301..32951325 (25 bp)
GTGTCGTCGATACTAGTCTATTTCT
NONE
Os.12617.1.S1_at--1070--6991Chr04:32951272..32951296 (25 bp)
GTACTGTATCCGTATTTGGCATGGC
NONE
Os.12617.1.S1_at--878--4731Chr04:32951232..32951256 (25 bp)
GCTGTACCTACTACGCTGAACATGT
NONE
Os.12617.1.S1_at--941--2491Chr04:32951214..32951238 (25 bp)
AACATGTTTCTGCAGGCTCGGTATA
NONE
Target Sequence 
AGCTAGCCTGCTTCGTGATTATGCAAATAAATACTGGAGCGGCCTGCTGCGAGACTACTATGGACCAAGGGCTGCCATCT
ACTTCAAGTACTTAATATTGAGCATGGAGAAAAAAGAACCTTTTGCTCTGGAGGAATGGAGGAGGGAATGGATTAGCCTC
ACAAACAACTGGCAGAGCGATTGGAAGGTCTTTCCAACCACAGCTACGGGAGACGCTCTGAACATCTCCCGGACACTTTA
CAAGAAGTACCTGCACGACGCTGACTTAATTCAGCCAGAAGGTATTATACGACTGCGAAATTTGAAGAATACACCTTGGT
AAATGAACTGGGGTTGTTGCAGCTGTAATGCCTTCTTTTTCATGAACATGAAACGAAACAGTGTCGTCGATACTAGTCTA
TTTCTATTTGTACTGTATCCGTATTTGGCATGGCTGAGACGGTAAATCCGCTGTACCTACTACGCTGAACATGTTTCTGC
AGGCTCGGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis