Browse Element(s) Details


Os.52910.1.S1_at

Description gb:AK069859.1
DB_XREF= gi:32979883
TID=Os.52910.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036M17, full insert sequence.
FL= gb:AK069859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5570011/11exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52910.1.S1_at--219--8411Chr04:32931495..32931641 (25 bp)
GGCCAAGGACTCTAGCGGGCGACTT
LOC_Os04g55700
Os.52910.1.S1_at--559--2291Chr04:32931465..32931489 (25 bp)
AAATGTGCTGCTGAAACGCGACAAT
LOC_Os04g55700
Os.52910.1.S1_at--168--6271Chr04:32931437..32931461 (25 bp)
GATGTGGCAAGCTTCTATGTACGAA
LOC_Os04g55700
Os.52910.1.S1_at--201--8371Chr04:32931408..32931432 (25 bp)
GGCGTATGGCGCTCAACTAAACAAG
LOC_Os04g55700
Os.52910.1.S1_at--771--5991Chr04:32931177..32931201 (25 bp)
GAGACCATTCGGCTAGGAGCAGTTT
LOC_Os04g55700
Os.52910.1.S1_at--270--8071Chr04:32931162..32931186 (25 bp)
GGAGCAGTTTTGATCTCACCATGAG
LOC_Os04g55700
Os.52910.1.S1_at--74--8171Chr04:32931129..32931153 (25 bp)
GGAACAATTTTGATCTCTAGACGCT
LOC_Os04g55700
Os.52910.1.S1_at--796--10031Chr04:32931112..32931136 (25 bp)
TAGACGCTCTTCTTGTTCAGCGGTT
LOC_Os04g55700
Os.52910.1.S1_at--10--6871Chr04:32931090..32931114 (25 bp)
GTTTGTGCGCTTTAGATTGCTAGGC
LOC_Os04g55700
Os.52910.1.S1_at--266--6791Chr04:32931048..32931072 (25 bp)
GTTAGGGCTCATTTTATTCCTCCAT
LOC_Os04g55700
Os.52910.1.S1_at--493--91Chr04:32931033..32931057 (25 bp)
ATTCCTCCATTTTATCGACTGTTGA
LOC_Os04g55700
Target Sequence 
GGCCAAGGACTCTAGCGGGCGACTTCAAAAAAATGTGCTGCTGAAACGCGACAATGGGGATGTGGCAAGCTTCTATGTAC
GAAAGATGGCGTATGGCGCTCAACTAAACAAGTCAGAACTTTCAAACAAGAGACCGCCACCTACCGAGCATGTAGAACCA
ACAAAAGAAGATAATGATGGGGATAAGCAAAAAAAGCGAAAAACTGGTAAAAAGCATGAGAAGAAGAAAGCAAAGATATC
AGTGGCTGAATGAAGATCTTTGGAGGGATGATTTTGAGATGCAGAGAGATTGGATGAATGAAGCTGGAGAAGGATGTTGA
GACCATTCGGCTAGGAGCAGTTTTGATCTCACCATGAGTCATGAGAGGAACAATTTTGATCTCTAGACGCTCTTCTTGTT
CAGCGGTTTGTGCGCTTTAGATTGCTAGGCATTAACTGTAGAAAGTTGTTAGGGCTCATTTTATTCCTCCATTTTATCGA
CTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis