Browse Element(s) Details


OsAffx.13041.1.S1_x_at

Description tigr:9629.m05432
TID=OsAffx.13041.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Asparaginase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g556208/11transposon protein, putative, unclassified
LOC_Os04g514208/11transposon protein, putative, unclassified
LOC_Os03g511207/11transposon protein, putative, unclassified
LOC_Os03g261006/11transposon protein, putative, unclassified
LOC_Os04g461505/11transposon protein, putative, unclassified
LOC_Os02g331603/11transposon protein, putative, unclassified
LOC_Os04g557102/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed
LOC_Os01g55620OsAffx.13041.1.S1_x_at8/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_x_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.1.S1_at3/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620Os.28110.1.S1_x_at1/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55630OsAffx.11615.1.S1_at11/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.8013.1.S1_at3/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.22346.1.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630OsAffx.27508.71.S1_s_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.12807.2.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55640NANA1+32384003..32384981Seven in absentia protein family protein
LOC_Os01g55650Os.13102.1.S1_at11/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55650Os.13102.1.S2_at5/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13041.1.S1_x_at--443--4974Chr12:25833402..25833547 (25 bp)
GCATCTTGACGGTGGGTTGCGCAGT
NONE
OsAffx.13041.1.S1_x_at--729--7673Chr03:14933975..14933999 (25 bp)
GGGTTGCGCAGTGGTGCACTCAAAC
LOC_Os03g26100
OsAffx.13041.1.S1_x_at--594--5014Chr04:27120917..27120941 (25 bp)
GCAGTGGTGCACTCAAACGGCCACA
NONE
OsAffx.13041.1.S1_x_at--818--8394Chr04:27120987..27121011 (25 bp)
GGCGCATCGGCGACTCGCCGTTGAT
LOC_Os04g46150
OsAffx.13041.1.S1_x_at--335--2955Chr04:27121033..27121052 (20 bp)
AAGGCCATCATACGCTCCACGCTGG
LOC_Os04g46150
OsAffx.13041.1.S1_x_at--1029--5752Chr04:32945027..32945051 (25 bp)
GACGTCGCCGCCGTGATGGAGTACA
LOC_Os04g55710
OsAffx.13041.1.S1_x_at--785--997Chr12:25833702..25833726 (25 bp)
AGGAGGCCATCGACTACTGCGTCAA
NONE
OsAffx.13041.1.S1_x_at--368--8534Chr12:25833735..25833759 (25 bp)
TGGACGAAGGGTTCATCGGGCTCAT
NONE
OsAffx.13041.1.S1_x_at--270--7555Chr04:27121178..27121202 (25 bp)
GTGGCGCACGGGTTCAACTGCACCG
LOC_Os04g46150
OsAffx.13041.1.S1_x_at--875--2555Chr12:25833797..25833821 (25 bp)
AACTGCACCGGCATGTTCAGCGGGT
NONE
OsAffx.13041.1.S1_x_at--238--7471Chr01:32376840..32376864 (25 bp)
GTGTGTAAATGACAGACAGGTCCCA
LOC_Os01g55620
Target Sequence 
GCATCTTGACGGTGGGTTGCGCAGTGGTGCACTCAAACGGCCACACCGCGGCGGCCATGTCCACGGGCGGGCTGATGAAC
AAGATGACCGGGCGCATCGGCGACTCGCCGTTGATCGGGTCGGGGGAAGGCAAGGCCATCATACGCTCCACGCTGGCGCG
CGACGTCGCCGCCGTGATGGAGTACAGGGGCGCCGGGCTGCAGGAGGCCATCGACTACTGCGTCAAGGAACGGCTGGACG
AAGGGTTCATCGGGCTCATCGCGGTGTCCNGCACCGGCGAGGTGGCGCACGGGTTCAACTGCACCGGCATGTTCAGCGGG
TGCGGCTGCAGGAGAAAAGAGAGAGAAGGGAGAGAGAGGGGGNAGGAAGAAGGGTTGGAGAGAGAAAGGATGACATGTGG
GTCNCACAATATATTTTGTGTGTAAATGACAGACAGGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13041.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis