Browse Element(s) Details


Os.34952.1.S1_at

Description gb:AK069522.1
DB_XREF= gi:32979546
TID=Os.34952.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transporter (P0460E08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025M02, full insert sequence.
FL= gb:AK069522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5561010/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed
LOC_Os01g55620OsAffx.13041.1.S1_x_at8/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_x_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.1.S1_at3/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620Os.28110.1.S1_x_at1/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55630OsAffx.11615.1.S1_at11/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.8013.1.S1_at3/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.22346.1.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630OsAffx.27508.71.S1_s_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.12807.2.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55640NANA1+32384003..32384981Seven in absentia protein family protein
LOC_Os01g55650Os.13102.1.S1_at11/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55650Os.13102.1.S2_at5/111+32384248..32389677patatin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34952.1.S1_at--1049--3791Chr01:32365254..32365278 (25 bp)
CTCGCCTACTTCGTGTGGTGCGGAT
LOC_Os01g55610
Os.34952.1.S1_at--494--2671Chr01:32365184..32365208 (25 bp)
AAGCGGTGGAAGACACCAAGACCAA
LOC_Os01g55610
Os.34952.1.S1_at--123--2631Chr01:32365134..32365158 (25 bp)
AACCTTTTTAGTGAGGCAGGCTGCT
LOC_Os01g55610
Os.34952.1.S1_at--444--1551Chr01:32365094..32365118 (25 bp)
AGCTTTCTACTTCTCTAGTTCTCTC
LOC_Os01g55610
Os.34952.1.S1_at--238--3771Chr01:32365082..32365106 (25 bp)
CTCTAGTTCTCTCTTGTGAAAATTG
LOC_Os01g55610
Os.34952.1.S1_at--125--7351Chr01:32365032..32365056 (25 bp)
GTGCAAAAATGGATGGTTCGACCTC
LOC_Os01g55610
Os.34952.1.S1_at--583--811Chr01:32365020..32365044 (25 bp)
ATGGTTCGACCTCGAATCCTATCAG
LOC_Os01g55610
Os.34952.1.S1_at--146--2331Chr01:32364983..32365007 (25 bp)
AAAGATCCTACAGGGCACAGGCTGC
LOC_Os01g55610
Os.34952.1.S1_at--915--871Chr01:32364965..32364989 (25 bp)
AGGCTGCTACCTGCAACGTTAAAAT
LOC_Os01g55610
Os.34952.1.S1_at--533--10311Chr01:32364915..32364939 (25 bp)
TTTCTGTTACTTGGATGGGTTGCAT
LOC_Os01g55610
Os.34952.1.S1_at--1038--7751Chr01:32364872..32364896 (25 bp)
GGTGACAGAAATTTTCTACCGACCG
NONE
Target Sequence 
CTCGCCTACTTCGTGTGGTGCGGATGGGCGTACGGCGAGGAGGGCCAGAACCGGGTGACCGCGGAGGAGGAAGCGGTGGA
AGACACCAAGACCAAGGAAGAACAGCAGCAGAAACTGNAAAACCTTTTTAGTGAGGCAGGCTGCTGCTGTGTNCTGCTTC
AGCTTTCTACTTCTCTAGTTCTCTCTTGTGAAAATTGTAGTAATATTTACATGTATATGTTGGTGCAAAAATGGATGGTT
CGACCTCGAATCCTATCAGCCCTCCGGATCCAAAGATCCTACAGGGCACAGGCTGCTACCTGCAACGTTAAAATGCTAGT
AGTAGCAGCAGTTTTTTTTTTTCTGTTACTTGGATGGGTTGCATATAAGTAGTGATAAAAACGGTGACAGAAATTTTCTA
CCGACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis