Browse Element(s) Details


Os.26583.1.A1_at

Description gb:AK122112.1
DB_XREF= gi:37991758
TID=Os.26583.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0460E08.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127O09, full insert sequence.
FL= gb:AK122112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5558011/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26583.1.A1_at--230--7871Chr01:32343688..32343712 (25 bp)
GGTTTGTATTTTGGGTAGCATGGTC
LOC_Os01g55580
Os.26583.1.A1_at--27--8631Chr01:32343677..32343701 (25 bp)
TGGGTAGCATGGTCAAGAGAATCAT
LOC_Os01g55580
Os.26583.1.A1_at--23--5971Chr01:32343661..32343685 (25 bp)
GAGAATCATGTTTTCTCCCTCTAAC
LOC_Os01g55580
Os.26583.1.A1_at--219--6811Chr01:32343652..32343676 (25 bp)
GTTTTCTCCCTCTAACATGTTGATC
LOC_Os01g55580
Os.26583.1.A1_at--529--1551Chr01:32343624..32343648 (25 bp)
AGCTTGTATCAGTCTTCATTCTTGT
LOC_Os01g55580
Os.26583.1.A1_at--713--1151Chr01:32343614..32343638 (25 bp)
AGTCTTCATTCTTGTCTTAGGTTCA
LOC_Os01g55580
Os.26583.1.A1_at--433--3651Chr01:32343599..32343623 (25 bp)
CTTAGGTTCAAGAAAGCTCCAATTT
LOC_Os01g55580
Os.26583.1.A1_at--288--4791Chr01:32343584..32343608 (25 bp)
GCTCCAATTTGTTCTCATTGGTAAA
LOC_Os01g55580
Os.26583.1.A1_at--854--6611Chr01:32343547..32343571 (25 bp)
GTTGGATAGTTAGCTTAGTCATAAA
LOC_Os01g55580
Os.26583.1.A1_at--694--4951Chr01:32343519..32343543 (25 bp)
GCATTTAGCCTTTATCTTAGTGTCT
LOC_Os01g55580
Os.26583.1.A1_at--682--9531Chr01:32343505..32343529 (25 bp)
TCTTAGTGTCTACATTGTTTGTTCC
LOC_Os01g55580
Target Sequence 
GGTTTGTATTTTGGGTAGCATGGTCAAGAGAATCATGTTTTCTCCCTCTAACATGTTGATCAGAAGCTTGTATCAGTCTT
CATTCTTGTCTTAGGTTCAAGAAAGCTCCAATTTGTTCTCATTGGTAAAAATAAGTGTAATGTTGGATAGTTAGCTTAGT
CATAAATATGCATTTAGCCTTTATCTTAGTGTCTACATTGTTTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26583.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis