Browse Element(s) Details


Os.9.1.S1_s_at

Description gb:D14673.1
DB_XREF= gi:287297
TID=Os.9.1
CNT=74
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.9 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for aspartate aminotransferase, complete cds.
PROD=aspartate aminotransferase
FL= gb:AK103133.1 gb:AB110193.1 gb:AK104829.1 gb:AK099338.1 gb:AK103586.1 gb:AK067557.1 gb:D14673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5554011/11Aspartate aminotransferase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55500Os.13087.1.S1_at11/111+32302851..32306904xanthine/uracil permease family protein, expressed
LOC_Os01g55510Os.49634.1.S1_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.49634.1.S1_x_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.42069.1.S1_x_at8/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0010150biological_processleaf senescence
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004069molecular_functionaspartate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9.1.S1_s_at--609--2711Chr01:32327237..32327261 (25 bp)
AAGCTTGTAATTAGGCCTATGTATT
LOC_Os01g55540
Os.9.1.S1_s_at--788--10091Chr01:32327226..32327250 (25 bp)
TAGGCCTATGTATTCAAACCCTCCT
LOC_Os01g55540
Os.9.1.S1_s_at--977--2371Chr01:32327211..32327235 (25 bp)
AAACCCTCCTATTCATGGTGCATCT
LOC_Os01g55540
Os.9.1.S1_s_at--867--10531Chr01:32327200..32327224 (25 bp)
TTCATGGTGCATCTATCGTGGCTAC
LOC_Os01g55540
Os.9.1.S1_s_at--778--9051Chr01:32327193..32327217 (25 bp)
TGCATCTATCGTGGCTACCATACTT
LOC_Os01g55540
Os.9.1.S1_s_at--133--7511Chr01:32327185..32327207 (23 bp)
GTGGCTACCATACTTAAGGACAGTG
LOC_Os01g55540
Os.9.1.S1_s_at--131--2931Chr01:32327039..32327192 (25 bp)
AAGGACAGTGCAATGTTCAATGAAT
LOC_Os01g55540
Os.9.1.S1_s_at--903--6751Chr01:32327025..32327049 (25 bp)
GTTCAATGAATGGACTGTGGAGCTG
LOC_Os01g55540
Os.9.1.S1_s_at--541--5311Chr01:32327001..32327025 (25 bp)
GAAGGGCATGGCTGATAGGATTATT
LOC_Os01g55540
Os.9.1.S1_s_at--39--6551Chr01:32326983..32327007 (25 bp)
GATTATTAGCATGAGGCAACAGCTT
LOC_Os01g55540
Os.9.1.S1_s_at--873--8231Chr01:32326969..32326993 (25 bp)
GGCAACAGCTTTTTGATGCTCTGAA
LOC_Os01g55540
Target Sequence 
AAGCTTGTAATTAGGCCTATGTATTCAAACCCTCCTATTCATGGTGCATCTATCGTGGCTACCATACTTAAGGACAGTGC
AATGTTCAATGAATGGACTGTGGAGCTGAAGGGCATGGCTGATAGGATTATTAGCATGAGGCAACAGCTTTTTGATGCTC
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis