Browse Element(s) Details


Os.11073.1.S1_at

Description gb:AK070142.1
DB_XREF= gi:32980166
TID=Os.11073.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU069857(E4450)~similar to Arabidopsis thaliana chromosome 1, F9I5.12~unknown protein (P0460E08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042H02, full insert sequence.
FL= gb:AK070142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g555209/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55500Os.13087.1.S1_at11/111+32302851..32306904xanthine/uracil permease family protein, expressed
LOC_Os01g55510Os.49634.1.S1_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.49634.1.S1_x_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.42069.1.S1_x_at8/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11073.1.S1_at--13--3651Chr01:32315501..32315525 (25 bp)
CTTCAACGTCATGTCCCGGATAGAG
LOC_Os01g55520
Os.11073.1.S1_at--237--8691Chr01:32315512..32315536 (25 bp)
TGTCCCGGATAGAGGACGTCCTCAA
LOC_Os01g55520
Os.11073.1.S1_at--888--671Chr01:32315655..32315679 (25 bp)
ATGACAGGGTCACCCAACGGCAGGA
LOC_Os01g55520
Os.11073.1.S1_at--886--5791Chr01:32315678..32315702 (25 bp)
GACGCTGCTCGACTTCATGGATGAC
LOC_Os01g55520
Os.11073.1.S1_at--425--5791Chr01:32315792..32315816 (25 bp)
GACGAACCTGAAGCAGACGTACATG
LOC_Os01g55520
Os.11073.1.S1_at--1060--5691Chr01:32315807..32315831 (25 bp)
GACGTACATGGACAACCTGTTCGGG
LOC_Os01g55520
Os.11073.1.S1_at--401--10211Chr01:32315908..32315932 (25 bp)
TATTTTGATCAAACTGGGCTCTCGC
LOC_Os01g55520
Os.11073.1.S1_at--590--9451Chr01:32315951..32315975 (25 bp)
TCGGCTTCTGGGTTTGTAGAGCTGA
LOC_Os01g55520
Os.11073.1.S1_at--743--5951Chr01:32315974..32315998 (25 bp)
GAGAATCTTCTGTACCATTTCAAGG
LOC_Os01g55520
Os.11073.1.S1_at--441--5651Chr01:32316024..32316048 (25 bp)
GACAGAGACATCTACTGACGTTCAT
NONE
Os.11073.1.S1_at--798--9911Chr01:32316036..32316060 (25 bp)
TACTGACGTTCATGCAGGTGTGCAA
NONE
Target Sequence 
CTTCAACGTCATGTCCCGGATAGAGGACGTCCTCAACGCCGACGACCACGCCAGGGAGAAGGCCAAGAAGGAGGCGCCGC
CGGCGCCGGCTATGGCCAACGACGCCGCGGAGCACCACCACCAGCAGGCTGGCGAGGTGGATGCCCCCTGCAAAATGACA
GGGTCACCCAACGGCAGGACGCTGCTCGACTTCATGGATGACTGGAANCGNTGANCGCCGATAGGCCCNTCGCCGACGGC
GCCTGANCCNGGCCGCACAGGAGGACGGAAGGCTGATGAAGCTGCCCNAACATCATGACGAACCTGAAGCAGACGTACAT
GGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACAT
AGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGA
GAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCTACTGACGTTCATGCAGGTG
TGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis