Browse Element(s) Details


Os.17701.2.S1_at

Description gb:AK072034.1
DB_XREF= gi:32982057
TID=Os.17701.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131G08.24 (B1131G08.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102B21, full insert sequence.
FL= gb:AK072034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5549011/11transcriptional regulator family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55470OsAffx.10637.1.S1_s_at6/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.3.S1_s_at3/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.4.S1_s_at1/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55500Os.13087.1.S1_at11/111+32302851..32306904xanthine/uracil permease family protein, expressed
LOC_Os01g55510Os.49634.1.S1_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.49634.1.S1_x_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.42069.1.S1_x_at8/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17701.2.S1_at--970--10231Chr01:32300540..32300564 (25 bp)
TTTGGGCGTATTGGCATTTCTCAAG
LOC_Os01g55490
Os.17701.2.S1_at--93--7571Chr01:32300543..32300567 (25 bp)
GGGCGTATTGGCATTTCTCAAGGGT
LOC_Os01g55490
Os.17701.2.S1_at--773--10851Chr01:32300550..32300574 (25 bp)
TTGGCATTTCTCAAGGGTGACATAC
LOC_Os01g55490
Os.17701.2.S1_at--393--7711Chr01:32300564..32300588 (25 bp)
GGGTGACATACTAACCTCATCTTGC
LOC_Os01g55490
Os.17701.2.S1_at--563--7371Chr01:32300566..32300590 (25 bp)
GTGACATACTAACCTCATCTTGCCA
LOC_Os01g55490
Os.17701.2.S1_at--1026--1731Chr01:32300577..32300601 (25 bp)
ACCTCATCTTGCCATGTTTAGGACA
LOC_Os01g55490
Os.17701.2.S1_at--690--3551Chr01:32300581..32300605 (25 bp)
CATCTTGCCATGTTTAGGACATTTT
LOC_Os01g55490
Os.17701.2.S1_at--516--4431Chr01:32300587..32300611 (25 bp)
GCCATGTTTAGGACATTTTCTTGAT
LOC_Os01g55490
Os.17701.2.S1_at--682--5671Chr01:32300598..32300622 (25 bp)
GACATTTTCTTGATTTTGGGCGGAT
LOC_Os01g55490
Os.17701.2.S1_at--635--151Chr01:32300609..32300633 (25 bp)
GATTTTGGGCGGATTTAAACTCAAT
LOC_Os01g55490
Os.17701.2.S1_at--591--9731Chr01:32300629..32300653 (25 bp)
TCAATAAATTTCCGCTTTCCCGTCG
LOC_Os01g55490
Target Sequence 
TTTGGGCGTATTGGCATTTCTCAAGGGTGACATACTAACCTCATCTTGCCATGTTTAGGACATTTTCTTGATTTTGGGCG
GATTTAAACTCAATAAATTTCCGCTTTCCCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17701.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis