Browse Element(s) Details


OsAffx.11451.3.S1_x_at

Description tigr:9629.m01770
TID=OsAffx.11451.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAD binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1823011/11expressed protein
LOC_Os01g429907/11expressed protein
LOC_Os05g211407/11hypothetical protein
LOC_Os01g430101/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g554901/11transcriptional regulator family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18200Os.45976.1.S1_x_at1/111+10181956..10185120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18210Os.46041.1.S1_at10/111+10190421..10193450Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
LOC_Os01g18220Os.1723.1.S1_at11/111+10197255..10200250expressed protein
LOC_Os01g18230OsAffx.11451.3.S1_x_at11/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.2.S1_x_at10/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.4.S1_x_at3/111+10208169..10208966expressed protein
LOC_Os01g18240Os.1726.1.S1_at11/111+10214269..10216474Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g18250OsAffx.15843.1.S1_x_at2/111+10231711..10232801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11451.3.S1_x_at--1151--3913Chr05:12417917..12417941 (25 bp)
CGGCGTGGCCCGCTTGCTATCGTAG
LOC_Os05g21140
OsAffx.11451.3.S1_x_at--240--10874Chr05:12418100..12418121 (22 bp)
TTGGATGCTCAGGTTGCTGAGGCAT
LOC_Os05g21140
OsAffx.11451.3.S1_x_at--1002--9633Chr05:12418108..12418177 (25 bp)
TCAGGTTGCTGAGGCATACAGTGCT
LOC_Os05g21140
OsAffx.11451.3.S1_x_at--1126--10693Chr05:12418113..12418182 (25 bp)
TTGCTGAGGCATACAGTGCTAATCT
LOC_Os05g21140
OsAffx.11451.3.S1_x_at--151--8293Chr05:12418166..12418189 (24 bp)
GGCATACAGTGCTAATCTAGTGCAA
LOC_Os05g21140
OsAffx.11451.3.S1_x_at--1041--3453Chr05:12418171..12418195 (25 bp)
CAGTGCTAATCTAGTGCAAATCGCC
LOC_Os05g21140
OsAffx.11451.3.S1_x_at--102--1053Chr05:12418248..12418272 (25 bp)
AGGTGCGCGCCTACGTCGTCTGCTG
LOC_Os05g21140
OsAffx.11451.3.S1_x_at--131--5771Chr01:10208348..10208372 (25 bp)
GACGTCGCCGCGCTCTGGGTGGTGC
LOC_Os01g18230
OsAffx.11451.3.S1_x_at--51--8511Chr01:10208302..10208326 (25 bp)
TGGCATGCACCAAGGCGAGGGCCAC
LOC_Os01g18230
OsAffx.11451.3.S1_x_at--1161--4351Chr01:10208219..10208243 (25 bp)
CCACCCGGTGGCTGTGCTGCAGTGA
LOC_Os01g18230
OsAffx.11451.3.S1_x_at--656--4735Chr12:26764655..26764694 (25 bp)
GCTGTGCTGCAGTGAGAGAAAAGAA
NONE
Target Sequence 
CGGCGTGGCCCGCTTGCTATCGTAGTCTACGCTCATGANGAGACGGCCATGTCGCNGGAGCAGGAGGATTGGGAGATCAA
TGGCATAGACAGATCNGGTTTGGATGCTCAGGTTGCTGAGGCATACAGTGCTAATCTAGTGCAAATCGCCNCGCCGCGGA
CGCCCCNCCCCGNGCTNGTGNTCACGCCGGTCACCGNCGACNAGGTGCGCGCCTACGTCGTCTGCTGCCGCNACCACGGC
CNCACNGTCCGCGCGCGCAGCGGCGGGCACNACTACGAGGGCCTCTCGTACCGCTCNCTCCNGNCGTCCNGNGACNGCGA
GGNGNGCAGCACGTTTCGCCGTCGTNGACGTCGCCGCGCTCTGGGTGGTGCGGCTGGACGCGGCGAGGGGAGTGGCATGC
ACCAAGGCGAGGGCCACGCGCGCCGTCCGCAGCGTCGTCGCCGCCGGACTCCCGCCTCCCCCACCGATCTCCTCCCCACC
CGGTGGCTGTGCTGCAGTGAGAGAAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11451.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis