Browse Element(s) Details


Os.1726.1.S1_at

Description gb:AK111803.1
DB_XREF= gi:37988466
TID=Os.1726.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (myb) (OSJNBa0004B13.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087D08, full insert sequence.
FL= gb:AK111803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1824011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18210Os.46041.1.S1_at10/111+10190421..10193450Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
LOC_Os01g18220Os.1723.1.S1_at11/111+10197255..10200250expressed protein
LOC_Os01g18230OsAffx.11451.3.S1_x_at11/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.2.S1_x_at10/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.4.S1_x_at3/111+10208169..10208966expressed protein
LOC_Os01g18240Os.1726.1.S1_at11/111+10214269..10216474Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g18250OsAffx.15843.1.S1_x_at2/111+10231711..10232801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1726.1.S1_at--1097--9631Chr01:10214870..10214894 (25 bp)
TCAGAGATGCCAGCGCCCATGCAGA
LOC_Os01g18240
Os.1726.1.S1_at--1008--631Chr01:10214852..10214876 (25 bp)
ATGCAGAACCTTAGCCAGTCACTGT
LOC_Os01g18240
Os.1726.1.S1_at--952--4411Chr01:10214839..10214863 (25 bp)
GCCAGTCACTGTATGAAGACGTTGT
LOC_Os01g18240
Os.1726.1.S1_at--168--8331Chr01:10214785..10214809 (25 bp)
GGCTCTGTGCAGCTTGGTCTCAAAA
LOC_Os01g18240
Os.1726.1.S1_at--45--9031Chr01:10214778..10214802 (25 bp)
TGCAGCTTGGTCTCAAAACCTGCTG
LOC_Os01g18240
Os.1726.1.S1_at--719--4371Chr01:10214753..10214777 (25 bp)
CCACAGCAACATCTTCCAGTAGTAT
LOC_Os01g18240
Os.1726.1.S1_at--19--3711Chr01:10214676..10214700 (25 bp)
CTAGGAACCATGTTCCAGCATGCAG
LOC_Os01g18240
Os.1726.1.S1_at--333--2731Chr01:10214609..10214633 (25 bp)
AAGCACAATGTTTCTTCAGAGATAC
LOC_Os01g18240
Os.1726.1.S1_at--664--1391Chr01:10214449..10214473 (25 bp)
AGACGAGTTGGGTTTAAGTTGCAGA
LOC_Os01g18240
Os.1726.1.S1_at--1060--10151Chr01:10214418..10214442 (25 bp)
TATAGAAATGTTCCGGAGTTTACCT
LOC_Os01g18240
Os.1726.1.S1_at--111--5171Chr01:10214355..10214379 (25 bp)
GCAAGTAGATCGACTTTTTTGTATT
LOC_Os01g18240
Target Sequence 
TCAGAGATGCCAGCGCCCATGCAGAACCTTAGCCAGTCACTGTATGAAGACGTTGTCAAAGCAGAGANCCAATTCAACAT
GGAGGGGCTCTGTGCAGCTTGGTCTCAAAACCTGCTGCCACAGCAACATCTTCCAGTAGTATCAGATATGTATGACAAGG
ATTTGCAAAGGATGTCCTTGTCTTTTGAGAATATCTAGGAACCATGTTCCAGCATGCAGGGAACAGAGCACCACANNTGN
AAATTGAGAGTTGAAAGCTTAGGAAGCACAATGTTTCTTCAGAGATACGTTNTACAGTGTACTCAGTTGTTTNGTGGATA
AATTATTGTGAGTGTTCACATAGATGCATTCTTTTGGTNAGACATGAATGAACATCAAAGAGCAATTCTTCAGTTGAAAG
AAAATGTAGTGCAGTGGGAAAAAAGAGACGAGTTGGGTTTAAGTTGCAGAAAAATGTATAGAAATGTTCCGGAGTTTACC
TTGTTTCCTTTGAAAAAATTATTGTCTTCATTTATACAAGCAAGTAGATCGACTTTTTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis