Browse Element(s) Details


Os.46041.1.S1_at

Description gb:CR279003
DB_XREF= gi:44665569
DB_XREF=CR279003
CLONE=y642h02p3
TID=Os.46041.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptidyl-prolyl cis-trans isomerase, chloroplast precursor (P0581F09.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1821010/11Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18170Os.7753.1.S1_at11/111+10164723..10165775Nectarin-1 precursor, putative, expressed
LOC_Os01g18180NANA1+10171168..10174361transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18190NANA1+10177478..10179182transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18200Os.45976.1.S1_x_at1/111+10181956..10185120transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g18210Os.46041.1.S1_at10/111+10190421..10193450Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
LOC_Os01g18220Os.1723.1.S1_at11/111+10197255..10200250expressed protein
LOC_Os01g18230OsAffx.11451.3.S1_x_at11/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.2.S1_x_at10/111+10208169..10208966expressed protein
LOC_Os01g18230OsAffx.11451.4.S1_x_at3/111+10208169..10208966expressed protein
LOC_Os01g18240Os.1726.1.S1_at11/111+10214269..10216474Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005624cellular_componentmembrane fraction
GO:0005829cellular_componentcytosol
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46041.1.S1_at--809--10451NONE
TTACATTAAAGCACACCGGTCCTGG
NONE
Os.46041.1.S1_at--8--1771Chr01:10192317..10192341 (25 bp)
ACCGGTCCTGGTGTACTAAGCATGG
LOC_Os01g18210
Os.46041.1.S1_at--108--2611Chr01:10192344..10192368 (25 bp)
AACGCTGGCCCTGACACAAATGGAA
LOC_Os01g18210
Os.46041.1.S1_at--270--5631Chr01:10193021..10193045 (25 bp)
GACACCATGGTTGGACAATCGTCAC
LOC_Os01g18210
Os.46041.1.S1_at--155--9411Chr01:10193039..10193063 (25 bp)
TCGTCACGTTGTCTTTGGGCATGTC
LOC_Os01g18210
Os.46041.1.S1_at--766--5551Chr01:10193103..10193127 (25 bp)
GAAACCAGCAGGTCCGATATTCCTA
LOC_Os01g18210
Os.46041.1.S1_at--711--5071Chr01:10193129..10193153 (25 bp)
GCAGCCCTGCAGAATCGTGAATTGT
LOC_Os01g18210
Os.46041.1.S1_at--511--2951Chr01:10193186..10193210 (25 bp)
AATGGTTCAGTTGTCGGATTAAGCC
LOC_Os01g18210
Os.46041.1.S1_at--287--6171Chr01:10193297..10193321 (25 bp)
GAGGATACTTGCGAGGCATTCGGCA
LOC_Os01g18210
Os.46041.1.S1_at--962--8971Chr01:10193329..10193353 (25 bp)
TGAACATCCCTCTTATCCAGTGATA
LOC_Os01g18210
Os.46041.1.S1_at--1130--7511Chr01:10193395..10193419 (25 bp)
GTGGAACTCGAATTACTGGTCTTTT
LOC_Os01g18210
Target Sequence 
TTACATTAAAGCACACCGGTCCTGGTGTACTAAGCATGGCAAACGCTGGCCCTGACACAAATGGAAGCCAATTTTTCATT
TGTANTGTGAAGACACCATGGTTGGACAATCGTCACGTTGTCTTTGGGCATGTCTTGGAGGGGATGGACGTGGTGAAGAA
TCTTGAATCACAAGAAACCAGCAGGTCCGATATTCCTAAGCAGCCCTGCAGAATCGTGAATTGTGGCGAGCTGCCCGTGG
ACGGTTGATTAAGTCAAATGGTTCAGTTGTCGGATTAAGCCAACATTTTTCNTTTTGTTCTGCGGCATATTGAATCTTAG
GGGAGGGCTAATTGAATCTTGTTCTGTTAGAACACTTTTGGTATAGTGAGGATACTTGCGAGGCATTCGGCAAGATAGAT
GAACATCCCTCTTATCCAGTGATATCCTGTTTGATGAGCTTAGAACTTTAAGTTACTCTTATCCAGTGGAACTCGAATTA
CTGGTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis