Browse Element(s) Details


Os.33076.1.S1_at

Description gb:AK101847.1
DB_XREF= gi:32987056
TID=Os.33076.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0460E08.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069J04, full insert sequence.
FL= gb:AK101847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5553011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55500Os.13087.1.S1_at11/111+32302851..32306904xanthine/uracil permease family protein, expressed
LOC_Os01g55510Os.49634.1.S1_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.49634.1.S1_x_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.42069.1.S1_x_at8/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33076.1.S1_at--200--4791Chr01:32319512..32319536 (25 bp)
GCTGCCTGCTTCATGTTTTTTGGAT
LOC_Os01g55530
Os.33076.1.S1_at--1038--6351Chr01:32319479..32319503 (25 bp)
GATCCTTTCCTGGTAGAACCGAGGC
LOC_Os01g55530
Os.33076.1.S1_at--194--1291Chr01:32319427..32319451 (25 bp)
AGATCGTCGTGCCACTTGCAATCAA
LOC_Os01g55530
Os.33076.1.S1_at--500--231Chr01:32319390..32319414 (25 bp)
ATATTCCCGATGTAATGCAGCACTG
LOC_Os01g55530
Os.33076.1.S1_at--98--8091Chr01:32319366..32319390 (25 bp)
GGAGCTGCTGCGTCTATGCACTGAG
LOC_Os01g55530
Os.33076.1.S1_at--657--2011Chr01:32319322..32319346 (25 bp)
ACTCAATGCTTTCTCATGCTGGCAA
LOC_Os01g55530
Os.33076.1.S1_at--185--3091Chr01:32319247..32319271 (25 bp)
AATACACCTACCTTTGGCAGGAGCT
LOC_Os01g55530
Os.33076.1.S1_at--81--3491Chr01:32319230..32319254 (25 bp)
CAGGAGCTGGCTCTTCTGAAAGCAT
LOC_Os01g55530
Os.33076.1.S1_at--938--10211Chr01:32319127..32319151 (25 bp)
TATTCATCCTGACTTCCATTTGTGG
LOC_Os01g55530
Os.33076.1.S1_at--1025--151Chr01:32319110..32319134 (25 bp)
ATTTGTGGCGAGCACCATCCTAACA
LOC_Os01g55530
Os.33076.1.S1_at--789--9251Chr01:32319093..32319117 (25 bp)
TCCTAACACGGTTTCTGCTCGAGAA
LOC_Os01g55530
Target Sequence 
GCTGCCTGCTTCATGTTTTTTGGATTTGGTTCTGATCCTTTCCTGGTAGAACCGAGGCCATCAGAGTTGATTTTCTTTGT
GAAGCAGATCGTCGTGCCACTTGCAATCAACACATTCATCACATATTCCCGATGTAATGCAGCACTGGAGCTGCTGCGTC
TATGCACTGAGGCATTGGAGCGGGCAGCTGACTCAATGCTTTCTCATGCTGGCAAATGGAGAGAAACACCATTGTCCTGT
TTCAGGCCAACTCAGTCAGAAGCCCAATACACCTACCTTTGGCAGGAGCTGGCTCTTCTGAAAGCATCTGTATTGGAAAC
ACGGGCCAAGCTGATGCTTCGAGGTGGACAGTATGACACTGGAGATGACCTAATAAGGAAGGCCATATTCATCCTGACTT
CCATTTGTGGCGAGCACCATCCTAACACGGTTTCTGCTCGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis