Browse Element(s) Details


Os.26583.2.S1_x_at

Description gb:NM_191332.1
DB_XREF= gi:34909747
GEN=P0460E08.26
TID=Os.26583.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0460E08.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0460E08.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5558011/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26583.2.S1_x_at--202--10851Chr01:32344366..32344390 (25 bp)
TTGGAGGTTCCCTAGCATCGACAAA
LOC_Os01g55580
Os.26583.2.S1_x_at--90--271Chr01:32344204..32344228 (25 bp)
ATAGGCCAATGTCTCCAGGAACACT
LOC_Os01g55580
Os.26583.2.S1_x_at--286--5631Chr01:32344157..32344181 (25 bp)
GACACGATGTTTATGACTTCCCAAA
LOC_Os01g55580
Os.26583.2.S1_x_at--837--3271Chr01:32344136..32344160 (25 bp)
CAAAATGTAGTTCCGCAGCAGCCAG
LOC_Os01g55580
Os.26583.2.S1_x_at--414--7471Chr01:32344063..32344087 (25 bp)
GTGTGCTTACAGAATTCCGTGATTG
LOC_Os01g55580
Os.26583.2.S1_x_at--184--9291Chr01:32344048..32344072 (25 bp)
TCCGTGATTGTCTCCATAAGCTTGT
LOC_Os01g55580
Os.26583.2.S1_x_at--1062--5951Chr01:32343894..32343918 (25 bp)
GAGAAGTTTTCCATGGCAATCAAAT
LOC_Os01g55580
Os.26583.2.S1_x_at--29--3091Chr01:32343877..32343901 (25 bp)
AATCAAATCTGAAGTGCCTGCCCAT
LOC_Os01g55580
Os.26583.2.S1_x_at--292--651Chr01:32343849..32343873 (25 bp)
ATGCAGGCGAATGGTGTTTCACGAA
LOC_Os01g55580
Os.26583.2.S1_x_at--764--6951Chr01:32343767..32343791 (25 bp)
GTAGACATCCTGCTGCTGGAAACTC
LOC_Os01g55580
Os.26583.2.S1_x_at--1151--8511Chr01:32343751..32343775 (25 bp)
TGGAAACTCCGCAACTGGGCATTTG
LOC_Os01g55580
Target Sequence 
TTGGAGGTTCCCTAGCATCGACAAACCATGACAGAGAAGAAAACAATAATGATCCAAATAATCAAAAGGCATCAGCTGAT
GACCCATCAACTGGAGGAACTCGTGCAGGCAAAGCTTCTCTAGAAGAGTCTAAACATGATTGCAATGATGATCAGAAATC
CAATAGGCCAATGTCTCCAGGAACACTAGCATTGATGTGTGATGAACAAGACACGATGTTTATGACTTCCCAAAATGTAG
TTCCGCAGCAGCCAGCACCTGTCAACCAGAACCAGTCTGAATTGTATGCAGAACAAGAAAGGTGTGTGCTTACAGAATTC
CGTGATTGTCTCCATAAGCTTGTGACATTCGGAAGAATGAAAGAGGAGAAGTTTTCCATGGCAATCAAATCTGAAGTGCC
TGCCCATCCCATGCAGGCGAATGGTGTTTCACGAATACCTTATTCAAAAGAAGTAGATGTACCTGTTGTAAAAACATTTC
TACAGAGTTCCAGTAGACATCCTGCTGCTGGAAACTCCGCAACTGGGCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26583.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis