Browse Element(s) Details


Os.42067.2.S1_at

Description gb:NM_191329.1
DB_XREF= gi:34909741
GEN=P0460E08.23
TID=Os.42067.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0460E08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0460E08.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5556011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42067.2.S1_at--411--1951Chr01:32339834..32339858 (25 bp)
ACGGCGCGCTGAGAGTTGAGCACTT
LOC_Os01g55560
Os.42067.2.S1_at--415--4571Chr01:32339831..32339855 (25 bp)
GCGCGCTGAGAGTTGAGCACTTGTT
LOC_Os01g55560
Os.42067.2.S1_at--379--4151Chr01:32339830..32339854 (25 bp)
CGCGCTGAGAGTTGAGCACTTGTTT
LOC_Os01g55560
Os.42067.2.S1_at--957--4571Chr01:32339829..32339853 (25 bp)
GCGCTGAGAGTTGAGCACTTGTTTG
LOC_Os01g55560
Os.42067.2.S1_at--535--4751Chr01:32339827..32339851 (25 bp)
GCTGAGAGTTGAGCACTTGTTTGGC
LOC_Os01g55560
Os.42067.2.S1_at--811--3851Chr01:32339826..32339850 (25 bp)
CTGAGAGTTGAGCACTTGTTTGGCT
LOC_Os01g55560
Os.42067.2.S1_at--836--6011Chr01:32339824..32339848 (25 bp)
GAGAGTTGAGCACTTGTTTGGCTTC
LOC_Os01g55560
Os.42067.2.S1_at--251--1351Chr01:32339823..32339847 (25 bp)
AGAGTTGAGCACTTGTTTGGCTTCT
LOC_Os01g55560
Os.42067.2.S1_at--1091--10531Chr01:32339802..32339826 (25 bp)
TTCTTGCCTTCTTCCCCGATCGTGT
LOC_Os01g55560
Os.42067.2.S1_at--848--4231Chr01:32339734..32339811 (25 bp)
CCGATCGTGTCTCCCGAGCTCAAGG
LOC_Os01g55560
Os.42067.2.S1_at--247--9411Chr01:32339730..32339807 (25 bp)
TCGTGTCTCCCGAGCTCAAGGACCT
LOC_Os01g55560
Target Sequence 
ACGGCGCGCTGAGAGTTGAGCACTTGTTTGGCTTCTTGCCTTCTTCCCCGATCGTGTCTCCCGAGCTCAAGGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42067.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis