Browse Element(s) Details


Os.28110.4.S1_x_at

Description gb:AK061502.1
DB_XREF= gi:32971520
TID=Os.28110.4
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013163N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E04, full insert sequence.
FL= gb:AK061502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5571010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28110.4.S1_x_at--617--9271Chr04:32943800..32943824 (25 bp)
TCCTGCTGTGCTTGAATTTCCCTAT
LOC_Os04g55710
Os.28110.4.S1_x_at--94--211Chr04:32943815..32943839 (25 bp)
ATTTCCCTATCAATCGCTAGAGCGG
LOC_Os04g55710
Os.28110.4.S1_x_at--611--4711Chr04:32943836..32943860 (25 bp)
GCGGCCATTAGCTTGTAGGTGTAGT
LOC_Os04g55710
Os.28110.4.S1_x_at--982--10211Chr04:32943887..32943911 (25 bp)
TATTCATTTCTTTCCCTTACATCAA
LOC_Os04g55710
Os.28110.4.S1_x_at--462--371Chr04:32943955..32943979 (25 bp)
ATCAATAGCCGCCATGCAGGTTTGC
LOC_Os04g55710
Os.28110.4.S1_x_at--346--1871Chr04:32944018..32944042 (25 bp)
ACGATTCGTGTTAAACCTTCCTGCG
LOC_Os04g55710
Os.28110.4.S1_x_at--273--3871Chr04:32944041..32944065 (25 bp)
CGGTATTTTGTATCGCCTAGTAGTA
LOC_Os04g55710
Os.28110.4.S1_x_at--638--7151NONE
GTCTAGATTGTGTAGCACCCAGCCA
NONE
Os.28110.4.S1_x_at--1053--2991Chr04:32944146..32944170 (25 bp)
AATGACCAGTCCGATGCATGTGCCG
LOC_Os04g55710
Os.28110.4.S1_x_at--315--9911Chr04:32944218..32944242 (25 bp)
TACTCCGTGGCACTGTAGCAACTAC
LOC_Os04g55710
Os.28110.4.S1_x_at--801--10571Chr04:32944262..32944286 (25 bp)
TTCTATGCACAGCTAGGCAGGCTCT
LOC_Os04g55710
Target Sequence 
TCCTGCTGTGCTTGAATTTCCCTATCAATCGCTAGAGCGGCCATTAGCTTGTAGGTGTAGTAATTTCTTCGTTAGTGNTG
GCGAAGGTATTCATTTCTTTCCCTTACATCAAGTGCTGANAAAAAAGAAAACTAAAAAAGTGCCACCCAACATGCATCAA
TAGCCGCCATGCAGGTTTGCACCTACCAAATCCTTTTTTTTTTATTTATTTGGTCGACACGATTCGTGTTAAACCTTCCT
GCGGTATTTTGTATCGCCTAGTAGTATAGTCGTGCGAGTCCTCAAGTCTAGATTGTGTAGCACCCAGCCACCCACACCAA
GCAAAGCCTAGGAGCACTGAAAATGAAATGACCAGTCCGATGCATGTGCCGGAAAAAACATTTTTCTTCACTAAACAAAA
GTAAACACTAGAACCAACTACTCCGTGGCACTGTAGCAACTACTAGCATGTACTAGGATGGATTCTATGCACAGCTAGGC
AGGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28110.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis