Browse Element(s) Details


Os.55918.1.S1_at

Description gb:AK108994.1
DB_XREF= gi:32994203
TID=Os.55918.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-G04, full insert sequence.
FL= gb:AK108994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5574010/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55918.1.S1_at--934--5611Chr04:32961083..32961107 (25 bp)
GACAACTTCTACTACAGGAACCTCC
LOC_Os04g55740
Os.55918.1.S1_at--500--1751Chr04:32961064..32961088 (25 bp)
ACCTCCTGAGGAACAAGGGCCTTCT
LOC_Os04g55740
Os.55918.1.S1_at--373--5831NONE
GACCAGCAGCTGTTCAGCGGCGGTT
NONE
Os.55918.1.S1_at--104--5791Chr04:32960957..32960981 (25 bp)
GACGACTTCCGTGGCGCCATGGTGA
LOC_Os04g55740
Os.55918.1.S1_at--337--9271Chr04:32960903..32960927 (25 bp)
TCCGGTGGCCAGGTCAGGGTTAACT
LOC_Os04g55740
Os.55918.1.S1_at--801--7431Chr04:32960822..32960846 (25 bp)
GTGTCAGGTTTCTTAATACCGTGAT
LOC_Os04g55740
Os.55918.1.S1_at--888--8791Chr04:32960773..32960797 (25 bp)
TGTTCTTCTTTCCTTCAGCGATGTA
LOC_Os04g55740
Os.55918.1.S1_at--1140--1631Chr04:32960757..32960781 (25 bp)
AGCGATGTAGTCTGCTTCGAACGGT
LOC_Os04g55740
Os.55918.1.S1_at--226--11Chr04:32960743..32960767 (25 bp)
CTTCGAACGGTTGTAGCACTACTAT
LOC_Os04g55740
Os.55918.1.S1_at--213--5731Chr04:32960689..32960713 (25 bp)
GACTGGTTCCTACTGAAAAATCGTG
LOC_Os04g55740
Os.55918.1.S1_at--1111--5111Chr04:32960662..32960686 (25 bp)
GCACAAGACCTTGTTTTACTGGAAT
LOC_Os04g55740
Target Sequence 
GACAACTTCTACTACAGGAACCTCCTGAGGAACAAGGGCCTTCTGCACTCGGACCAGCAGCTGTTCAGCGGCGGTTCCGC
CGACGCGCAGACCACCGCCTACGCCACCGACATGGCCGGCTTCTTCGACGACTTCCGTGGCGCCATGGTGAAGATGGGCG
GCATCGGCGTCGTCACCGGCTCCGGTGGCCAGGTCAGGGTTAACTGCAGGAAGGTCAATTAAAGTGGTTGATACCGTGAT
CAGTGTTAATGTGGTTGGTTAGTGTCAGGTTTCTTAATACCGTGATCAGTGTTAATGTGGTTTGTACAAGTGTTCTTCTT
TCCTTCAGCGATGTAGTCTGCTTCGAACGGTTGTAGCACTACTATACGCAAAAATAATCTGATGAAGGAACAAAGACTGG
TTCCTACTGAAAAATCGTGTTGCACAAGACCTTGTTTTACTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis