Browse Element(s) Details


OsAffx.26621.1.S1_at

Description tigr:9632.m05429
TID=OsAffx.26621.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5577011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein
LOC_Os04g55790OsAffx.26621.2.S1_at11/114+32992302..32995530expressed protein
LOC_Os04g55800Os.7802.1.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55800Os.7802.2.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55810OsAffx.26623.1.S1_at11/114+33006750..33011131expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26621.1.S1_at--713--3591Chr04:32978226..32978250 (25 bp)
CATTCTGCTCTTGGATACATCTTCA
LOC_Os04g55770
OsAffx.26621.1.S1_at--190--2091Chr04:32978210..32978234 (25 bp)
ACATCTTCAGTGACTTACCCAGTAC
LOC_Os04g55770
OsAffx.26621.1.S1_at--348--7011Chr04:32978189..32978213 (25 bp)
GTACTCTGACTAATCTTGAGACGCT
LOC_Os04g55770
OsAffx.26621.1.S1_at--636--251Chr04:32978010..32978034 (25 bp)
ATATGCTAAGTAGGCTTCCCAGACT
LOC_Os04g55770
OsAffx.26621.1.S1_at--889--5691Chr04:32977989..32978013 (25 bp)
GACTTATTTCTCTACGCCATTTGAC
LOC_Os04g55770
OsAffx.26621.1.S1_at--364--6771Chr04:32977958..32977982 (25 bp)
GTTAACTATATCTGACCTGCCACAA
LOC_Os04g55770
OsAffx.26621.1.S1_at--477--9751Chr04:32977703..32977727 (25 bp)
TAAGGAGTCTACCTAGATGCCCACA
LOC_Os04g55770
OsAffx.26621.1.S1_at--59--3811Chr04:32977678..32977702 (25 bp)
CTCCCATCTCAGTTGGGTTCAGATA
LOC_Os04g55770
OsAffx.26621.1.S1_at--674--2511Chr04:32977622..32977646 (25 bp)
AACTTGCACTTCATATTCTCCGGAA
LOC_Os04g55770
OsAffx.26621.1.S1_at--571--3771Chr04:32977518..32977542 (25 bp)
CTCTCTCCTGATGGCTATAGTGTTG
LOC_Os04g55770
OsAffx.26621.1.S1_at--841--1111Chr04:32977500..32977524 (25 bp)
AGTGTTGCATTGGAGTTCCTCGGAA
LOC_Os04g55770
Target Sequence 
CATTCTGCTCTTGGATACATCTTCAGTGACTTACCCAGTACTCTGACTAATCTTGAGACGCTAACTTTAAAGTCAAAACA
AGTTGAGAGGATTGATATGCTAAGTAGGCTTCCCAGACTTATTTCTCTACGCCATTTGACATTGGGGTTAACTATATCTG
ACCTGCCACAAAGGAAGATTGATTTACTTGACTTTGCTTCTCTATTGAAGGCTGCTCCTTTCATGGAAAAACTAGAACTG
CATATGAAGATGGTATGTGTGCATCAGCGATATTGTCAAGATGATGGTGAGTTAAGGAGTCTACCTAGATGCCCACACTC
CCATCTCAGTTGGGTTCAGATAACAGGATTTTTCGGTGAGAAAGATCAACTGGAACTTGCACTTCATATTCTCCGGAATG
CAACATTTCTTAAAGCAATGGTGATAGAGACAAGTTTGAATACAGAATCCGAGAGTGTAAATTGTTACCCGGAACGCCTC
TCTCCTGATGGCTATAGTGTTGCATTGGAGTTCCTCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis