Browse Element(s) Details


OsAffx.26623.1.S1_at

Description tigr:9632.m05433
TID=OsAffx.26623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AI997943 product-related.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5581011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein
LOC_Os04g55790OsAffx.26621.2.S1_at11/114+32992302..32995530expressed protein
LOC_Os04g55800Os.7802.1.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55800Os.7802.2.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55810OsAffx.26623.1.S1_at11/114+33006750..33011131expressed protein
LOC_Os04g55820NANA4+33013372..33019528retrotransposon protein, putative, unclassified
LOC_Os04g55830NANA4+33020145..33023408retrotransposon protein, putative, unclassified
LOC_Os04g55840Os.55099.1.S1_at11/114+33026126..33032184expressed protein
LOC_Os04g55850Os.26483.1.S1_at11/114+33034849..33037531S1/P1 Nuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26623.1.S1_at--573--8131Chr04:33007911..33007935 (25 bp)
GGACTTATCTTTCTTTGTGCTTTTG
LOC_Os04g55810
OsAffx.26623.1.S1_at--151--9751Chr04:33007883..33007906 (24 bp)
TAATTGTGCTGTGCCTTAGCATGGC
LOC_Os04g55810
OsAffx.26623.1.S1_at--445--2491Chr04:33007240..33007515 (25 bp)
AACAGATGCAGGTTGAGTCCCTCTC
LOC_Os04g55810
OsAffx.26623.1.S1_at--1048--7951Chr04:33007052..33007076 (25 bp)
GGATCATCATCGTTGGCTTATTCGA
LOC_Os04g55810
OsAffx.26623.1.S1_at--897--9371Chr04:33007031..33007055 (25 bp)
TCGAGCTCCTCGTCAAAGATAGATA
LOC_Os04g55810
OsAffx.26623.1.S1_at--84--3091Chr04:33006985..33007009 (25 bp)
AATCACACCCGCCAAGGTTGCGTGA
LOC_Os04g55810
OsAffx.26623.1.S1_at--429--8631Chr04:33006934..33006958 (25 bp)
TGGGATCGGCAATCCGACAGCTCGA
LOC_Os04g55810
OsAffx.26623.1.S1_at--473--4711Chr04:33006896..33006920 (25 bp)
GCTGGCCATATCTTCTTGAGGCGGA
LOC_Os04g55810
OsAffx.26623.1.S1_at--1036--9731Chr04:33006859..33006883 (25 bp)
TAGTTTGGGCCATGGTGTACCTGGT
LOC_Os04g55810
OsAffx.26623.1.S1_at--179--7691Chr04:33006820..33006844 (25 bp)
GGGTCCTGTACATACTAACGTCACA
LOC_Os04g55810
OsAffx.26623.1.S1_at--229--5611Chr04:33006792..33006816 (25 bp)
GACAATATCAGAAGCTCGCCCTGGT
LOC_Os04g55810
Target Sequence 
GGACTTATCTTTCTTTGTGCTTTTGGTGATAATTGTGCTGTGCCTTAGCATGGCAAGGAAGATTAAAGAAAACATTGAGC
TGACAAAAAGAAGAATGGTGCATCCTACAGAAGTGGAAATTGAACTCAAGAAGAGACTTGATCAACTCACTGATCGTTTA
ATTCAGAAACAGATGCAGGTTGAGTCCCTCTCTTCAGAGAAAGCAGCCTTGTTACTGAGAATAGAGGCAGTTTCAAGATC
GCTTGACAATAACGGATCATCATCGTTGGCTTATTCGAGCTCCTCGTCAAAGATAGATATCGAAGCTGGTACATGGCAAG
AATCACACCCGCCAAGGTTGCGTGACAGGATACGGAATGGACAGCGGCAACTGGGATCGGCAATCCGACAGCTCGATTCC
ATCTTCTCCGCTGGCCATATCTTCTTGAGGCGGAATCCTAAGGCGCTAGTTTGGGCCATGGTGTACCTGGTGTGCCTCCA
CATATGGGTCCTGTACATACTAACGTCACATCCGACAATATCAGAAGCTCGCCCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis