Browse Element(s) Details


Os.55099.1.S1_at

Description gb:AK107489.1
DB_XREF= gi:32992698
TID=Os.55099.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C12, full insert sequence.
FL= gb:AK107489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5584011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55800Os.7802.1.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55800Os.7802.2.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55810OsAffx.26623.1.S1_at11/114+33006750..33011131expressed protein
LOC_Os04g55820NANA4+33013372..33019528retrotransposon protein, putative, unclassified
LOC_Os04g55830NANA4+33020145..33023408retrotransposon protein, putative, unclassified
LOC_Os04g55840Os.55099.1.S1_at11/114+33026126..33032184expressed protein
LOC_Os04g55850Os.26483.1.S1_at11/114+33034849..33037531S1/P1 Nuclease family protein, expressed
LOC_Os04g55860Os.18680.1.S1_at11/114+33039613..33042124Peptidyl-tRNA hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os04g55870NANA4+33049114..33052341transposon protein, putative, unclassified
LOC_Os04g55879NANA4+33052982..33059751retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55099.1.S1_at--671--8271Chr04:33031625..33031649 (25 bp)
GGCATCCCCGTACTTGTGGAGAATC
LOC_Os04g55840
Os.55099.1.S1_at--159--9851Chr04:33031683..33031707 (25 bp)
TAAATCAGCATTTCATCTACCCCAG
LOC_Os04g55840
Os.55099.1.S1_at--871--8811Chr04:33031731..33031755 (25 bp)
TGTTGGGACCTCTGAATTCGCATGA
LOC_Os04g55840
Os.55099.1.S1_at--659--10871Chr04:33031872..33031896 (25 bp)
TTGGCACCAGTTCAACTCCTAATGA
LOC_Os04g55840
Os.55099.1.S1_at--452--911Chr04:33031949..33031973 (25 bp)
AGGCGGTTAGCGATCTTGCTGTACA
LOC_Os04g55840
Os.55099.1.S1_at--610--871Chr04:33031973..33031997 (25 bp)
AGGCCTGGGCACTATGACATTCTTT
LOC_Os04g55840
Os.55099.1.S1_at--1071--2811Chr04:33032003..33032027 (25 bp)
AAGTAGACCTACCTTTCTCTGGAGT
LOC_Os04g55840
Os.55099.1.S1_at--676--1091Chr04:33032039..33032063 (25 bp)
AGTGTGCTTGATTCTCGACGGTAAC
LOC_Os04g55840
Os.55099.1.S1_at--1055--8731Chr04:33032079..33032103 (25 bp)
TGTAACTTTGTTCTGCCTGACCTGA
LOC_Os04g55840
Os.55099.1.S1_at--167--1291Chr04:33032138..33032162 (25 bp)
AGATCTGTTGTTGCTATTCATCCCG
LOC_Os04g55840
Os.55099.1.S1_at--64--131Chr04:33032153..33032177 (25 bp)
ATTCATCCCGTTGTCACATAGCGTG
LOC_Os04g55840
Target Sequence 
GGCATCCCCGTACTTGTGGAGAATCTCGATACAACCTCGGAGACTGACACCCCCATACTAAATCAGCATTTCATCTACCC
CAGACCAGAATCAGAAGAGGGCACGATGTTGGGACCTCTGAATTCGCATGAGATTGTCTCTCCTGAAAGCAGTGGTTACC
ATGCAGCTAGAGGTGAGCTTCAGAATCAGCCTAGTACCAGTGGCTCCAGTACAAACAGCTCAACAGAAGCATTGGGACTG
CAATCAATTGGCACCAGTTCAACTCCTAATGAGCGAGATGGAAAGGGAGACAGGACCATCAACGACCTATCCCCAGCAGA
AAGAAGGCGGTTAGCGATCTTGCTGTACAGGCCTGGGCACTATGACATTCTTTGTCCCAAGTAGACCTACCTTTCTCTGG
AGTCTGGAATACGTAGTGTGCTTGATTCTCGACGGTAACATTTGAGCTGTGGCTTGTAACTTTGTTCTGCCTGACCTGAG
CCGTAGAGCTATTCATGTCCTTGACTTGTATGGAGATCTGTTGTTGCTATTCATCCCGTTGTCACATAGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis