Browse Element(s) Details


Os.26483.1.S1_at

Description gb:AK106059.1
DB_XREF= gi:32991268
TID=Os.26483.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence.
FL= gb:AK059436.1 gb:AK106059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5585011/11S1/P1 Nuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55810OsAffx.26623.1.S1_at11/114+33006750..33011131expressed protein
LOC_Os04g55820NANA4+33013372..33019528retrotransposon protein, putative, unclassified
LOC_Os04g55830NANA4+33020145..33023408retrotransposon protein, putative, unclassified
LOC_Os04g55840Os.55099.1.S1_at11/114+33026126..33032184expressed protein
LOC_Os04g55850Os.26483.1.S1_at11/114+33034849..33037531S1/P1 Nuclease family protein, expressed
LOC_Os04g55860Os.18680.1.S1_at11/114+33039613..33042124Peptidyl-tRNA hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os04g55870NANA4+33049114..33052341transposon protein, putative, unclassified
LOC_Os04g55879NANA4+33052982..33059751retrotransposon protein, putative, unclassified
LOC_Os04g55890OsAffx.22947.1.S1_x_at11/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.2.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.3.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.5.S1_x_at2/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006308biological_processDNA catabolism
GO:0048443biological_processstamen development
GO:0000014molecular_functionsingle-stranded DNA specific endodeoxyribonuclease activity
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
GO:0016891molecular_functionendoribonuclease activity, producing 5'-phosphomonoesters
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26483.1.S1_at--446--2931Chr04:33036647..33036671 (25 bp)
AAGGAATTCTACAACGAGGACGTGA
LOC_Os04g55850
Os.26483.1.S1_at--46--7651Chr04:33036831..33036855 (25 bp)
GGGAGACTTGCCGTAGCCGGACAAA
LOC_Os04g55850
Os.26483.1.S1_at--738--9951Chr04:33036844..33036868 (25 bp)
TAGCCGGACAAAGACTTGTGCCGAT
LOC_Os04g55850
Os.26483.1.S1_at--852--3611Chr04:33036858..33036972 (25 bp)
CTTGTGCCGATAAGTACGCCGAGGA
LOC_Os04g55850
Os.26483.1.S1_at--54--9031Chr04:33036976..33037000 (25 bp)
TGCAAAGCTCGCGTGCAAAGCGTAC
LOC_Os04g55850
Os.26483.1.S1_at--960--7411Chr04:33037005..33037029 (25 bp)
GTGTTGAGCAAGAATCCACCTTAGA
LOC_Os04g55850
Os.26483.1.S1_at--1040--2791Chr04:33037140..33037163 (24 bp)
AAGATGACTATTTCTTCGCTGCCCT
LOC_Os04g55850
Os.26483.1.S1_at--48--4791Chr04:33037156..33037180 (25 bp)
GCTGCCCTGCCTGTTGTTCAGAAGA
LOC_Os04g55850
Os.26483.1.S1_at--310--911Chr04:33037201..33037225 (25 bp)
AGGCTTGCTGCAATACTCAACCGGA
LOC_Os04g55850
Os.26483.1.S1_at--107--9911Chr04:33037214..33037238 (25 bp)
TACTCAACCGGATCTTCAGCGGGAA
LOC_Os04g55850
Os.26483.1.S1_at--894--5491Chr04:33037289..33037313 (25 bp)
GAAAATAGCCCGCATTCTGAATTAC
LOC_Os04g55850
Target Sequence 
AAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCANCGAGGA
GAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCA
AAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGG
ATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAA
TAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis