Browse Element(s) Details


Os.22712.1.S1_at

Description gb:AK105329.1
DB_XREF= gi:32990538
TID=Os.22712.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B12, full insert sequence.
FL= gb:AK105329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5577011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein
LOC_Os04g55790OsAffx.26621.2.S1_at11/114+32992302..32995530expressed protein
LOC_Os04g55800Os.7802.1.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55800Os.7802.2.S1_at11/114+32995972..33001514sulfate transporter 3.3, putative, expressed
LOC_Os04g55810OsAffx.26623.1.S1_at11/114+33006750..33011131expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22712.1.S1_at--1077--4112Chr04:32980667..32980691 (25 bp)
CGCATCCTTGGTTCTCTGGGAAGAG
LOC_Os04g55770
Os.22712.1.S1_at--1129--5351Chr04:32980648..32980672 (25 bp)
GAAGAGCTATCGGTTTGCCTTTCTC
LOC_Os04g55770
Os.22712.1.S1_at--12--10812Chr04:32980573..32980597 (25 bp)
TTGTCCAAATCGTCGCGGGACTTCG
LOC_Os04g55770
Os.22712.1.S1_at--329--6692Chr04:32980530..32980554 (25 bp)
GTTCGGCCATGGATGAGTGAAGCTT
LOC_Os04g55770
Os.22712.1.S1_at--296--6111Chr04:32980516..32980540 (25 bp)
GAGTGAAGCTTACAATTTCGGGAAA
LOC_Os04g55770
Os.22712.1.S1_at--1097--5091Chr04:32980455..32980479 (25 bp)
GCACACAATTTGTTCTGGACGTTTG
LOC_Os04g55770
Os.22712.1.S1_at--54--9852Chr04:32980429..32980453 (25 bp)
TAAATTTGTCATGCTCTTGTCCGTT
LOC_Os04g55770
Os.22712.1.S1_at--805--9552Chr04:32980415..32980439 (25 bp)
TCTTGTCCGTTCCTGTAGTATTGGA
LOC_Os04g55770
Os.22712.1.S1_at--137--10252Chr04:32980313..32980337 (25 bp)
TTTGGTATTGGTTACTTCTGGAATT
LOC_Os04g55770
Os.22712.1.S1_at--369--832Chr04:32980268..32980292 (25 bp)
ATGGTTGCAGCTAGTTTTATATTTC
LOC_Os04g55770
Os.22712.1.S1_at--1026--652Chr04:32980226..32980250 (25 bp)
ATGCAATGCTTGGTGATTTCTGGAA
LOC_Os04g55770
Target Sequence 
CGCATCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACA
CCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGC
TTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATA
AATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATNTTATAATGGAGTCATTGGACTGNNATCAATCTTGGNG
TGTTTTCCTGTAATATTACGTTTTCNAGCTGNGTTTTGGTATTGGTTACTTCTGGAATTGNAGAGATGAGTTNANTGACA
TGGTTGCAGCTAGTTTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis