Browse Element(s) Details


OsAffx.26619.1.S1_at

Description tigr:9632.m05427
TID=OsAffx.26619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5575011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein
LOC_Os04g55760OsAffx.26620.1.S1_at11/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55760Os.46647.1.S1_at1/114+32973555..32977063Protein kinase domain containing protein, expressed
LOC_Os04g55770Os.22712.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55770OsAffx.26621.1.S1_at11/114+32977450..32985753hypothetical protein
LOC_Os04g55780OsAffx.29486.2.S1_x_at11/114+32987347..32988595hypothetical protein
LOC_Os04g55790OsAffx.26621.2.S1_at11/114+32992302..32995530expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26619.1.S1_at--1018--8611Chr04:32967103..32967127 (25 bp)
TGTCGACCAGGCACAACCGGTTCGT
LOC_Os04g55750
OsAffx.26619.1.S1_at--555--5791Chr04:32967174..32967198 (25 bp)
GACGACTACATCAGCGTCTGCGCCG
LOC_Os04g55750
OsAffx.26619.1.S1_at--580--831Chr04:32967489..32967513 (25 bp)
ATGGACCGCGATCAGGACATGTTCT
LOC_Os04g55750
OsAffx.26619.1.S1_at--992--3471Chr04:32967501..32967525 (25 bp)
CAGGACATGTTCTGGTACGACACCA
LOC_Os04g55750
OsAffx.26619.1.S1_at--285--9951Chr04:32967516..32967540 (25 bp)
TACGACACCAGGGTCTCTCAATGGA
LOC_Os04g55750
OsAffx.26619.1.S1_at--842--7151Chr04:32967528..32967552 (25 bp)
GTCTCTCAATGGACGCGATGTGTCA
LOC_Os04g55750
OsAffx.26619.1.S1_at--965--6251Chr04:32967544..32967568 (25 bp)
GATGTGTCAGCGTGCACAGCGCCAT
LOC_Os04g55750
OsAffx.26619.1.S1_at--757--3531Chr04:32967566..32967590 (25 bp)
CATCGACGACGCTGTTGACGGGAAC
LOC_Os04g55750
OsAffx.26619.1.S1_at--178--8951Chr04:32967581..32967605 (25 bp)
TGACGGGAACCTTTACGGCCGAGCA
LOC_Os04g55750
OsAffx.26619.1.S1_at--285--5091Chr04:32967603..32967627 (25 bp)
GCACGGTGCAATTGCTCCAAAGGAT
LOC_Os04g55750
OsAffx.26619.1.S1_at--250--5551Chr04:32967634..32967658 (25 bp)
GAAACCCTTACCTAGCCAATGGATG
LOC_Os04g55750
Target Sequence 
TGTCGACCAGGCACAACCGGTTCGTCGCCATGGGCTGCAACCTCCTCGCCAACCTCGTCGCCAACGACGACGACGACTAC
ATCAGCGTCTGCGCCGCGCTGTGCGTGGTCCGATCCGCGCTGCCGAGGGACGCCGCCGCCGCCTCAAGCTGCTCCGGCTT
CGGCTGCTGCCAGACGCCGGTGGCGAGGGGCCTCCCGTCCTACGGCGTCCACCTCAACGACCTGACCCAGAGGTCGGTCA
CCGTGGGGTCGTACGGGGCGGCGTTCATCGCCGACGGCGAGTGGTTCGCCGGCGAGCAACGCTCCCTGCAGCTCGGCTTC
GTCGCTGACCCGCGGAAGCTGGCCGACTCGACGGCGGTCCCGACGGTGCTGGAGTGGTCGCTGGACATGGACCGCGATCA
GGACATGTTCTGGTACGACACCAGGGTCTCTCAATGGACGCGATGTGTCAGCGTGCACAGCGCCATCGACGACGCTGTTG
ACGGGAACCTTTACGGCCGAGCACGGTGCAATTGCTCCAAAGGATACGAGGGAAACCCTTACCTAGCCAATGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis