Browse Element(s) Details


Os.49676.1.S1_at

Description gb:AK105164.1
DB_XREF= gi:32990373
TID=Os.49676.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D05, full insert sequence.
FL= gb:AK105164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5561011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55570Os.47917.1.S1_at11/114+32861822..32867352expressed protein
LOC_Os04g55580NANA4+32869534..32870176GRF zinc finger family protein
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed
LOC_Os04g55600Os.23067.1.S1_at11/114+32882540..32883372expressed protein
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49676.1.S1_at--400--5071Chr04:32889250..32889274 (25 bp)
GCAGCGTGCAGCGAAGCGACGACTT
LOC_Os04g55610
Os.49676.1.S1_at--579--4111Chr04:32889239..32889263 (25 bp)
CGAAGCGACGACTTGCTCTCGTGAA
LOC_Os04g55610
Os.49676.1.S1_at--738--9051Chr04:32889226..32889250 (25 bp)
TGCTCTCGTGAAACTTGGGTTGGGA
LOC_Os04g55610
Os.49676.1.S1_at--350--4971Chr04:32888884..32888908 (25 bp)
GCATCTCCTACTGAAAAGCTGACGA
LOC_Os04g55610
Os.49676.1.S1_at--1024--8931Chr04:32888865..32888889 (25 bp)
TGACGAACTGCTATTGCTTCTCTCT
LOC_Os04g55610
Os.49676.1.S1_at--812--9091Chr04:32888783..32888807 (25 bp)
TGCTCTTGGTGTTCCACGTGGCGAC
LOC_Os04g55610
Os.49676.1.S1_at--391--1911Chr04:32888768..32888792 (25 bp)
ACGTGGCGACACCATTGCGAGGTTC
LOC_Os04g55610
Os.49676.1.S1_at--123--71Chr04:32888755..32888779 (25 bp)
ATTGCGAGGTTCACCGTATCAGGTT
LOC_Os04g55610
Os.49676.1.S1_at--1126--3351Chr04:32888744..32888768 (25 bp)
CACCGTATCAGGTTCAGGGCTGGTT
LOC_Os04g55610
Os.49676.1.S1_at--439--6751Chr04:32888733..32888757 (25 bp)
GTTCAGGGCTGGTTGTAAGTTGTAA
LOC_Os04g55610
Os.49676.1.S1_at--152--8751Chr04:32888720..32888744 (25 bp)
TGTAAGTTGTAACCGCGTGATTTTG
LOC_Os04g55610
Target Sequence 
GCAGCGTGCAGCGAAGCGACGACTTGCTCTCGTGAAACTTGGGTTGGGAGCAACCGAGCAAAGCAAGCGGCCGAGCGGGC
TGTGGTATGGGGTTCCACCTGGTGGCGATCGTGGCGGCGAGGGGGTTCCTCCACCTGTTCCACCTCTCGGCGCCGCTGCT
GTGGCCGCTCAACCTCTGGCTGCCGCTCCCGCGCCACCTGCCCGCCGCCTGCGCCGCGCTCTACGGCGGGGTTGTCTTCC
ACGCCGCCTTGCTGCGCCGCGCCTACGCGCGCCGGGGCGGCGGCGGCAACGTCTGGAGCCGAAGCATCCGCGGCGGCGAC
GGCGGCGGCGGAGAGGCGGACGAGCTCCTCCGCCAGGCGCTGCTCAGCATCTCCTACTGAAAAGCTGACGAACTGCTATT
GCTTCTCTCTTCTTCTTCTTGGTTTTTTTTTTTTTTGGGNTCATTCTTTTTTTGNTTCTTGATGCTCTGCTCTTGGTGTT
CCACGTGGCGACACCATTGCGAGGTTCACCGTATCAGGTTCAGGGCTGGTTGTAAGTTGTAACCGCGTGATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis