Browse Element(s) Details


Os.49747.1.S1_at

Description gb:AJ556181.1
DB_XREF= gi:46408854
TID=Os.49747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for homeobox protein HB3 (hb3 gene)
DEF=Oryza sativa (japonica cultivar-group) partial mRNA for homeobox protein HB3 (hb3 gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g555906/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55560Os.9874.1.S1_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.9874.1.S1_s_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.46461.1.A1_x_at10/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560OsAffx.27068.1.S1_x_at1/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55570Os.47917.1.S1_at11/114+32861822..32867352expressed protein
LOC_Os04g55580NANA4+32869534..32870176GRF zinc finger family protein
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed
LOC_Os04g55600Os.23067.1.S1_at11/114+32882540..32883372expressed protein
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009947biological_processcentrolateral axis specification
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0045449biological_processregulation of transcription
GO:0048314biological_processembryo sac morphogenesis
GO:0048366biological_processleaf development
GO:0048437biological_processfloral organ development
GO:0048446biological_processpetal morphogenesis
GO:0048482biological_processovule morphogenesis
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0048353cellular_componentprimary endosperm nucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49747.1.S1_at--1114--9331Chr04:32877165..32877189 (25 bp)
TCGCGCCAGAAACGCTTCCAAGCTG
LOC_Os04g55590
Os.49747.1.S1_at--618--5551Chr04:32877157..32877181 (25 bp)
GAAACGCTTCCAAGCTGCTCAACTA
LOC_Os04g55590
Os.49747.1.S1_at--945--4751Chr04:32877066..32877168 (25 bp)
GCTGCTCAACTACACTGTGCAGGTG
LOC_Os04g55590
Os.49747.1.S1_at--882--1771Chr04:32877016..32877040 (25 bp)
ACCCGTCGGCGGAGCAGATAAAGGT
LOC_Os04g55590
Os.49747.1.S1_at--701--611Chr04:32876966..32876990 (25 bp)
ATGCGGACGCCGAACTCCGTCCAGA
LOC_Os04g55590
Os.49747.1.S1_at--98--2551Chr04:32876954..32876978 (25 bp)
AACTCCGTCCAGATCGAGCGGATCA
LOC_Os04g55590
Os.49747.1.S1_at--413--3631NONE
CTTGCTGCGCCGACCGCTAACGAAA
NONE
Os.49747.1.S1_at--1090--4491NONE
GCCGACCGCTAACGAAACCAAATAG
NONE
Os.49747.1.S1_at--426--2231NONE
AAATAGGCACCGTACAACAAGGAGA
NONE
Os.49747.1.S1_at--816--4751NONE
GCTGCACCGACGAAGTGTCCCTGGA
NONE
Os.49747.1.S1_at--318--5791NONE
GACGAAGTGTCCCTGGAGCTCTTCC
NONE
Target Sequence 
TCGCGCCAGAAACGCTTCCAAGCTGCTCAACTACACTGTGCAGGTGCCGGCGGCGGGGACGACGAGGTGGAACCCGTCGG
CGGAGCAGATAAAGGTGCTGGAGATGCTGTACCGCGGCGGGATGCGGACGCCGAACTCCGTCCAGATCGAGCGGATCACG
GAGGAGCTCGGCAAGTACGGCCGGATCGAGGGCAAGAACGTCTTCTACTGGTTCCAGAATCACAAGGCCCGCGAGCGCCA
GAAGCAGAAGCGCGCCGCCCTCCTCACCCTCAGGACGCTCGACCCTTCCTTGCTGCGCCGACCGCTAACGAAACCAAATA
GGCACCGTACAACAAGGAGAAGGACGTGGAAGATGGATTGGCGAGCTGCAAGCGGCGGTGCAAGGCGTGGGTTGACGGCG
CCGGCGATGGAGACGCGGTGGTGGCGACGGAGGCGGCGGCGGCTGCACCGACGAAGTGTCCCTGGAGCTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis