Browse Element(s) Details


Os.9874.1.S1_at

Description gb:AK121346.1
DB_XREF= gi:37990969
TID=Os.9874.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121E19, full insert sequence.
FL= gb:AK121346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5556011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55550OsAffx.26615.1.S1_at11/114+32833967..32834859hypothetical protein
LOC_Os04g55560Os.9874.1.S1_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.9874.1.S1_s_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.46461.1.A1_x_at10/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560OsAffx.27068.1.S1_x_at1/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55570Os.47917.1.S1_at11/114+32861822..32867352expressed protein
LOC_Os04g55580NANA4+32869534..32870176GRF zinc finger family protein
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009408biological_processresponse to heat
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9874.1.S1_at--1021--4871Chr04:32856207..32856231 (25 bp)
GCTTTCCAAGAAACGTAACTGCCGA
LOC_Os04g55560
Os.9874.1.S1_at--820--10651Chr04:32856210..32856234 (25 bp)
TTCCAAGAAACGTAACTGCCGAGAT
LOC_Os04g55560
Os.9874.1.S1_at--849--1411Chr04:32856215..32856239 (25 bp)
AGAAACGTAACTGCCGAGATGTGGA
LOC_Os04g55560
Os.9874.1.S1_at--796--7051Chr04:32856221..32856245 (25 bp)
GTAACTGCCGAGATGTGGAGCATAT
LOC_Os04g55560
Os.9874.1.S1_at--1146--1971Chr04:32856224..32856248 (25 bp)
ACTGCCGAGATGTGGAGCATATAGA
LOC_Os04g55560
Os.9874.1.S1_at--376--8071Chr04:32856237..32856261 (25 bp)
GGAGCATATAGAAGTATTCGTCCTT
LOC_Os04g55560
Os.9874.1.S1_at--288--2831Chr04:32856248..32856272 (25 bp)
AAGTATTCGTCCTTCTAGATGTTGG
LOC_Os04g55560
Os.9874.1.S1_at--336--111Chr04:32856252..32856276 (25 bp)
ATTCGTCCTTCTAGATGTTGGTACT
LOC_Os04g55560
Os.9874.1.S1_at--848--9411Chr04:32856254..32856278 (25 bp)
TCGTCCTTCTAGATGTTGGTACTAA
LOC_Os04g55560
Os.9874.1.S1_at--97--7251Chr04:32856256..32856280 (25 bp)
GTCCTTCTAGATGTTGGTACTAAAG
LOC_Os04g55560
Os.9874.1.S1_at--391--8591Chr04:32856270..32856294 (25 bp)
TGGTACTAAAGTAATGTTCTTTCTT
LOC_Os04g55560
Target Sequence 
GCTTTCCAAGAAACGTAACTGCCGAGATGTGGAGCATATAGAAGTATTCGTCCTTCTAGATGTTGGTACTAAAGTAATGT
TCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis