Browse Element(s) Details


Os.47917.1.S1_at

Description gb:AK103112.1
DB_XREF= gi:32988321
TID=Os.47917.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119E14, full insert sequence.
FL= gb:AK103112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5557011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55560Os.9874.1.S1_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.9874.1.S1_s_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.46461.1.A1_x_at10/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560OsAffx.27068.1.S1_x_at1/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55570Os.47917.1.S1_at11/114+32861822..32867352expressed protein
LOC_Os04g55580NANA4+32869534..32870176GRF zinc finger family protein
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed
LOC_Os04g55600Os.23067.1.S1_at11/114+32882540..32883372expressed protein
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47917.1.S1_at--119--10731Chr04:32866858..32866882 (25 bp)
TTGCTCTGTCGACAACGGAGGCGAT
LOC_Os04g55570
Os.47917.1.S1_at--1102--6551Chr04:32866883..32866907 (25 bp)
GATTCAGTAACATGCAGTTCCCACC
LOC_Os04g55570
Os.47917.1.S1_at--604--891Chr04:32866931..32866955 (25 bp)
AGGCCCTACGATGTGAATGGAACTT
LOC_Os04g55570
Os.47917.1.S1_at--173--1031Chr04:32866977..32867001 (25 bp)
AGGTAGTAGCACTTATGCCGAGCAA
LOC_Os04g55570
Os.47917.1.S1_at--740--2291Chr04:32867071..32867095 (25 bp)
AAATGTCGTTGCGACTGCTTAGCCT
LOC_Os04g55570
Os.47917.1.S1_at--95--3491Chr04:32867097..32867121 (25 bp)
CATGGATGATAGATTGCCCCTTCTC
LOC_Os04g55570
Os.47917.1.S1_at--904--811Chr04:32867150..32867174 (25 bp)
ATGGATTGCCCTCTTCAGGTGTAAA
LOC_Os04g55570
Os.47917.1.S1_at--551--6611Chr04:32867187..32867211 (25 bp)
GATTGGCACTTGAGCTGTGTCGTTT
LOC_Os04g55570
Os.47917.1.S1_at--273--151Chr04:32867271..32867295 (25 bp)
ATTAGCGTGATTTGCAATGTTTCCG
LOC_Os04g55570
Os.47917.1.S1_at--50--751Chr04:32867287..32867311 (25 bp)
ATGTTTCCGCAACCATTACACTGTT
LOC_Os04g55570
Os.47917.1.S1_at--983--9531Chr04:32867327..32867351 (25 bp)
TCTATCTCTGCTTTGGTTTACCGTG
LOC_Os04g55570
Target Sequence 
TTGCTCTGTCGACAACGGAGGCGATGATTCAGTAACATGCAGTTCCCACCCAATGCCGGTGGCACCACCAATGAGGCCCT
ACGATGTGAATGGAACTTGCAAGGATGAGGCTGCTCTCAAGGTAGTAGCACTTATGCCGAGCAAGCAGAAGGGGAACACC
AACTTGCTGAAAAGGATTCTGGCAGGAAGGAGAAAGGAAGCCATGACCANGCCAAATGTCGTTGCGACTGCTTAGCCTCC
ATGGATGATAGATTGCCCCTTCTCCGGTGTAAATTAAGTGTGGCCGTGGATGATGGATTGCCCTCTTCAGGTGTAAATTA
AGTGTGGCCGATTGGCACTTGAGCTGTGTCGTTTTGATCACGTTGGTAGTAAGAACTAAGAACAGTGCAATGTATATGTA
ACATGCGGTATGTATTAGCGTGATTTGCAATGTTTCCGCAACCATTACACTGTTGCTTGAGCTTATGAATCTATCTCTGC
TTTGGTTTACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis