Browse Element(s) Details


Os.46461.1.A1_x_at

Description gb:AK099991.1
DB_XREF= gi:32985200
TID=Os.46461.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131A17, full insert sequence.
FL= gb:AK099991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5556010/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55550OsAffx.26615.1.S1_at11/114+32833967..32834859hypothetical protein
LOC_Os04g55560Os.9874.1.S1_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.9874.1.S1_s_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.46461.1.A1_x_at10/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560OsAffx.27068.1.S1_x_at1/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55570Os.47917.1.S1_at11/114+32861822..32867352expressed protein
LOC_Os04g55580NANA4+32869534..32870176GRF zinc finger family protein
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009408biological_processresponse to heat
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46461.1.A1_x_at--888--2651Chr04:32855476..32855500 (25 bp)
AAGCCTCAACCTGGCTGCAGAAGAA
LOC_Os04g55560
Os.46461.1.A1_x_at--676--3191Chr04:32855493..32855517 (25 bp)
CAGAAGAACGGGTTCCATTCCCTGA
LOC_Os04g55560
Os.46461.1.A1_x_at--809--4251Chr04:32855519..32855543 (25 bp)
CCGGCCCACCTAAGATGATCAAAGA
LOC_Os04g55560
Os.46461.1.A1_x_at--213--10511Chr04:32855551..32855575 (25 bp)
TTCAAGATCGCTGCATTCATCGTCT
LOC_Os04g55560
Os.46461.1.A1_x_at--744--3811Chr04:32855574..32855598 (25 bp)
CTCCTCGTCGATCGATCATGGCAAA
LOC_Os04g55560
Os.46461.1.A1_x_at--1068--6331Chr04:32855678..32855702 (25 bp)
GATGCTATTCTTTTGCTCTACCTTT
LOC_Os04g55560
Os.46461.1.A1_x_at--1084--10392Chr04:32855688..32855712 (25 bp)
TTTTGCTCTACCTTTTTTCTTCTCT
LOC_Os04g55560
Os.46461.1.A1_x_at--382--9571Chr04:32855719..32855743 (25 bp)
TCTTCTCTGTTTCTTGATTGGGCGA
LOC_Os04g55560
Os.46461.1.A1_x_at--486--2291Chr04:32855792..32855816 (25 bp)
AAATGAGGAGCTCCCTAGAAGGCGA
LOC_Os04g55560
Os.46461.1.A1_x_at--675--6011Chr04:32855817..32855841 (25 bp)
GAGAGATTGGCCAAGCGTCGCCTCA
LOC_Os04g55560
Os.46461.1.A1_x_at--45--2091NONE
ACATCAGGGCTCATTTTTTTCGGTC
NONE
Target Sequence 
AAGCCTCAACCTGGCTGCAGAAGAACGGGTTCCATTCCCTGACCCGGCCCACCTAAGATGATCAAAGATTTAAAATTCAA
GATCGCTGCATTCATCGTCTCCTCGTCGATCGATCATGGCAAAGATCGATGGAGAGAGAGAGGTGTGTGTCACTGACGCA
GGGAAAAACTCAATGCAGATTTACCAGCAAGAACAAGAGCTGGATGCTATTCTTTTGCTCTACCTTTTTTCTTCTCTCTT
TCTTCTTCTCTGTTTCTTGATTGGGCGAGCGAGATGGAGATGGATCNTGATCATGAATGGGACACAAGTGGGCATGTAAA
TGAGGAGCTCCCTAGAAGGCGAGAGAGATTGGCCAAGCGTCGCCTCAAGCAGNGTAGGAGTATCTATCTTTTGCNGTTTC
GCTCGCTTTCTTTCCTTCTTTTNTNTNNNCCATGGCCAACAACGATGACTNNGGGNNNNAACATCAGGGCTCATTTTTTT
CGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46461.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis