Browse Element(s) Details


OsAffx.27068.1.S1_x_at

Description tigr:9633.m02637
TID=OsAffx.27068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2880011/11hypothetical protein
LOC_Os05g393801/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g555601/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein
LOC_Os05g28790NANA5+16798352..16798876retrotransposon protein, putative, LINE subclass
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28810OsAffx.27069.1.S1_at10/115+16806760..16807741hypothetical protein
LOC_Os05g28820NANA5+16808834..16815061retrotransposon protein, putative, unclassified
LOC_Os05g28830Os.20378.1.S1_at11/115+16816424..16818149expressed protein
LOC_Os05g28840Os.18438.1.S1_at11/115+16827979..16829065expressed protein
LOC_Os05g28840Os.54627.1.S1_at1/115+16827979..16829065expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009408biological_processresponse to heat
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27068.1.S1_x_at--834--3711Chr05:16805582..16805606 (25 bp)
CTAGCAGCGGGCATGGTTGTCGTCG
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--453--5812Chr05:23018748..23018772 (25 bp)
GACGCCGGCCGTACTGCGCAGCGCT
LOC_Os05g39380
OsAffx.27068.1.S1_x_at--425--1591Chr05:16805282..16805306 (25 bp)
AGCTCGCAGTACTGCGGCGTCAAGT
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--126--4132Chr04:32853260..32853284 (25 bp)
CGCACCGGGCGATGGGAATCGCACA
LOC_Os04g55560
OsAffx.27068.1.S1_x_at--1092--5231Chr05:16805044..16805258 (25 bp)
GAATCGCACATATGGACGTACGATC
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--854--10091Chr05:16805034..16805055 (22 bp)
TATGGACGTACGATCTAGCGGCGAT
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--614--8111Chr05:16805031..16805055 (25 bp)
GGACGTACGATCTAGCGGCGATCAA
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--74--6411Chr05:16804945..16804969 (25 bp)
GATCTGAAGCAGGTGAGAACAAGTT
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--238--7371Chr05:16804933..16804957 (25 bp)
GTGAGAACAAGTTTAACGAGATCAT
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--501--2591Chr05:16804919..16804943 (25 bp)
AACGAGATCATTGTGGATGAGCAAT
LOC_Os05g28800
OsAffx.27068.1.S1_x_at--939--31Chr05:16804910..16804934 (25 bp)
ATTGTGGATGAGCAATCTGACCAAG
LOC_Os05g28800
Target Sequence 
CTAGCAGCGGGCATGGTTGTCGTCGGCGCCCTTTCCCGACGCCGGCCGTACTGCGCAGCGCTCGCCCACGCCGCGCCGCC
GCGGTGGGGCATGGTGGTGAGGCGGGCGACGCGACGCCCAATCCGACGCGGGCCGCGGTCGCGCAGCTCGCAGTACTGCG
GCGTCAAGTTCTACCGCCGCACCGGGCGATGGGAATCGCACATATGGACGTACGATCTAGCGGCGATCAAGTTCCGCGGC
GTGGAGGGCTGGAGGCCGACATCAATTTCAGCTTGGAGGATTATGGGGGATGATCTGAAGCAGGTGAGAACAAGTTTAAC
GAGATCATTGTGGATGAGCAATCTGACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27068.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis