Browse Element(s) Details


Os.51575.1.S1_at

Description gb:AK063096.1
DB_XREF= gi:32973114
TID=Os.51575.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C01, full insert sequence.
FL= gb:AK063096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2878010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein
LOC_Os05g28790NANA5+16798352..16798876retrotransposon protein, putative, LINE subclass
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28810OsAffx.27069.1.S1_at10/115+16806760..16807741hypothetical protein
LOC_Os05g28820NANA5+16808834..16815061retrotransposon protein, putative, unclassified
LOC_Os05g28830Os.20378.1.S1_at11/115+16816424..16818149expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51575.1.S1_at--1026--5731Chr05:16794586..16794610 (25 bp)
GACGGCTTCAGGTTCTACAGCGGCG
LOC_Os05g28780
Os.51575.1.S1_at--963--4831NONE
GCTACACTCCTGACAGAGGGACGTT
NONE
Os.51575.1.S1_at--345--1531Chr05:16795484..16795508 (25 bp)
AGCAGTGCGGCGACGAGTACTACCA
LOC_Os05g28780
Os.51575.1.S1_at--744--5031Chr05:16795524..16795548 (25 bp)
GCAGACGACGGAGCAGCAATACGGT
LOC_Os05g28780
Os.51575.1.S1_at--720--3091Chr05:16795541..16795565 (25 bp)
AATACGGTGGGTACTATGGCAGCGA
LOC_Os05g28780
Os.51575.1.S1_at--1143--7531Chr05:16795569..16795593 (25 bp)
GGGCGAATACCCAACTACGACTAGT
LOC_Os05g28780
Os.51575.1.S1_at--90--1851Chr05:16795585..16795609 (25 bp)
ACGACTAGTACGCTTCCTGCTTCAG
LOC_Os05g28780
Os.51575.1.S1_at--400--10671Chr05:16795598..16795622 (25 bp)
TTCCTGCTTCAGACTACTGCTACGG
LOC_Os05g28780
Os.51575.1.S1_at--110--9571Chr05:16795676..16795700 (25 bp)
TCTTCTCCGCTTCTATGGTGCTTCT
LOC_Os05g28780
Os.51575.1.S1_at--1112--7771Chr05:16795692..16795716 (25 bp)
GGTGCTTCTGCTGCTTGTAATATAA
LOC_Os05g28780
Os.51575.1.S1_at--586--3091Chr05:16795724..16795748 (25 bp)
AATACTCCGATACAGTTCATCGTTT
LOC_Os05g28780
Target Sequence 
GACGGCTTCAGGTTCTACAGCGGCGCCTCGCTGCCCGCGGTCAAGGCCGCGCTCGACACCGGCTGCAGCTACACTCCTGA
CAGAGGGACGTTTGAGATTAGGGAGCGTAAGCAGTGCGGCGACGAGTACTACCACTACAGCCACCACGAGCAGACGACGG
AGCAGCAATACGGTGGGTACTATGGCAGCGAGGAGGGCGAATACCCAACTACGACTAGTACGCTTCCTGCTTCAGACTAC
TGCTACGGCGCCGGCGCCAGCAGCCTAGGCCTTCGCTACAGCCTGCTGCAGATGCTCATGCTCTTCTCCGCTTCTATGGT
GCTTCTGCTGCTTGTAATATAAGGAATACAATACTCCGATACAGTTCATCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis