Browse Element(s) Details


OsAffx.27066.1.S1_at

Description tigr:9633.m02633
TID=OsAffx.27066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2877011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28720Os.24294.1.A1_at11/115+16764919..16767041pentatricopeptide, putative, expressed
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein
LOC_Os05g28790NANA5+16798352..16798876retrotransposon protein, putative, LINE subclass
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28810OsAffx.27069.1.S1_at10/115+16806760..16807741hypothetical protein
LOC_Os05g28820NANA5+16808834..16815061retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0040007biological_processgrowth
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27066.1.S1_at--300--6951Chr05:16787825..16787849 (25 bp)
GTAGTTCCAGGGACACAGGATGCAA
LOC_Os05g28770
OsAffx.27066.1.S1_at--529--9011Chr05:16787845..16787869 (25 bp)
TGCAATCCAGATTGTGGCACAAGCT
LOC_Os05g28770
OsAffx.27066.1.S1_at--965--1591Chr05:16787866..16787890 (25 bp)
AGCTGCTCTCTGCTTTGACAATAGA
LOC_Os05g28770
OsAffx.27066.1.S1_at--362--5611Chr05:16788948..16788967 (20 bp)
GACAAGTGATCAACGGGTGCCTGCA
LOC_Os05g28770
OsAffx.27066.1.S1_at--463--3051Chr05:16788967..16788991 (25 bp)
AATCGATGGGCATCAACGTCACCAC
LOC_Os05g28770
OsAffx.27066.1.S1_at--357--7291Chr05:16789103..16789127 (25 bp)
GTGCGTGAACGGCATCTTCGGCAAC
LOC_Os05g28770
OsAffx.27066.1.S1_at--727--9211Chr05:16789174..16789198 (25 bp)
TCCAGATGGCCTGCGGCAACGTCAA
LOC_Os05g28770
OsAffx.27066.1.S1_at--730--7611Chr05:16789320..16789342 (23 bp)
GGGAATGCTTCTCCTAATTCAGGCT
LOC_Os05g28770
OsAffx.27066.1.S1_at--414--3151Chr05:16789335..16789692 (25 bp)
AATTCAGGCTCACACGTGGCGGTAA
LOC_Os05g28770
OsAffx.27066.1.S1_at--199--9771Chr05:16789690..16789714 (25 bp)
TAAAGCGTCCGGGTTATCCGACCAG
LOC_Os05g28770
OsAffx.27066.1.S1_at--895--1871Chr05:16789743..16789767 (25 bp)
ACGAGGGTGTTTTCCTCTCTGCTAA
LOC_Os05g28770
Target Sequence 
GTAGTTCCAGGGACACAGGATGCAATCCAGATTGTGGCACAAGCTGCTCTCTGCTTTGACAATAGACAAGTGATCAACGG
GTGCCTGCAATCGATGGGCATCAACGTCACCACCACAACCGGTGGCAGCGGCGCCACCACGTCGGCTCCGGCGGCGGCGA
ACGGGTCGGCGGCGGCGACCATGTGCAGCGCGCCGTGCTTCGGGCAGATGACCATGATGATGGGGTGCGTGAACGGCATC
TTCGGCAACTTCGCCGGCTACAGCCCGGGCCTCATGCAGGGAGTCCAGGCCGTCTTCCAGATGGCCTGCGGCAACGTCAA
TGGCCAGGGCGGCGCCGGCGCCGCCGCCGGTGGCGGTGGCGGTGGCAGTGCAGGAGCCTCCGGCGGTAGTGGTGGTGGTG
GCGGCGGCGCCGGCGGTGCTACTGGTGGTGGCGCTGGATCGGGGAATGCTTCTCCTAATTCAGGCTCACACGTGGCGGTA
AAGCGTCCGGGTTATCCGACCAGCGGAGCAGCTGGGCCCACTGTCAGCCTCACGAGGGTGTTTTCCTCTCTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis