Browse Element(s) Details


Os.22312.3.A1_a_at

Description gb:CB653857
DB_XREF= gi:29657582
DB_XREF=OSJNEc05E13.r
CLONE=OSJNEc05E13
TID=Os.22312.3
CNT=36
FEA=EST
TIER=Stack
STK=12
UG=Os.22312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041H15, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2874011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28700NANA5+16751664..16754297retrotransposon protein, putative, unclassified
LOC_Os05g28710Os.9610.1.S1_s_at11/115+16754545..16758942expressed protein
LOC_Os05g28720Os.24294.1.A1_at11/115+16764919..16767041pentatricopeptide, putative, expressed
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein
LOC_Os05g28790NANA5+16798352..16798876retrotransposon protein, putative, LINE subclass
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22312.3.A1_a_at--794--4851Chr05:16779058..16779082 (25 bp)
GCTACGTGCTGACCCAGGAGGTGAT
LOC_Os05g28740
Os.22312.3.A1_a_at--679--6751Chr05:16779665..16779689 (25 bp)
GTTACGGTTTCCTGCAGAGGACGCT
LOC_Os05g28740
Os.22312.3.A1_a_at--311--2651Chr05:16779706..16779730 (25 bp)
AACCACTGCGTCCAGCACTGCAAGT
LOC_Os05g28740
Os.22312.3.A1_a_at--781--2931Chr05:16779769..16779793 (25 bp)
AAGGCCTCTTGATGCGCCAACTCCG
LOC_Os05g28740
Os.22312.3.A1_a_at--1048--7971Chr05:16779801..16779825 (25 bp)
GGATGCAATCTGTGGAATGTTGTGA
LOC_Os05g28740
Os.22312.3.A1_a_at--415--811Chr05:16779830..16779854 (25 bp)
ATGGGTGTATGTATATAGTGGCCTT
LOC_Os05g28740
Os.22312.3.A1_a_at--272--291Chr05:16779844..16779868 (25 bp)
ATAGTGGCCTTGGTGCAGAGTTTGT
LOC_Os05g28740
Os.22312.3.A1_a_at--791--4431Chr05:16779850..16779874 (25 bp)
GCCTTGGTGCAGAGTTTGTGTATGT
LOC_Os05g28740
Os.22312.3.A1_a_at--461--7431Chr05:16779873..16779897 (25 bp)
GTGTAGTAGTACATGTTTTCCTTGT
LOC_Os05g28740
Os.22312.3.A1_a_at--1116--6931Chr05:16779878..16779902 (25 bp)
GTAGTACATGTTTTCCTTGTAGTAA
LOC_Os05g28740
Os.22312.3.A1_a_at--418--7051Chr05:16779906..16779930 (25 bp)
GTAACAACATTATTGCACTCTCTAA
LOC_Os05g28740
Target Sequence 
GCTACGTGCTGACCCAGGAGGTGATGGACAGCATGGACCGCTACATGGCCACCGCCGCCGACTCCGTCGTCGCCAAGGCC
CGCGACATNTGCACCGCCTTCCCCAATGTGAAGGTGGAGACGCGGGTGGAGAAAGGGGACCCGAGGGATGTGATCTGCGG
GGCGGTGGAGAAGGCCGGCGCGGACATGGTGGTGATGGGGAGCCATGGTTACGGTTTCCTGCAGAGGACGCTGCTGGGGA
GCGTCAGCAACCACTGCGTCCAGCACTGCAAGTGCCCCGTCGTCGTCGTCAAGAGGCCCGGCACCAACGCCAAGGCCTCT
TGATGCGCCAACTCCGCGGTCCAGGATGCAATCTGTGGAATGTTGTGATAATATGGGTGTATGTATATAGTGGCCTTGGT
GCAGAGTTTGTGTATGTGTAGTAGTACATGTTTTCCTTGTAGTAACAAGTAACAACATTATTGCACTCTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22312.3.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis