Browse Element(s) Details


Os.9610.1.S1_s_at

Description gb:AU085852
DB_XREF= gi:7332506
DB_XREF=AU085852
CLONE=E1177
TID=Os.9610.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9610 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174756.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2871011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28650OsAffx.27064.1.S1_at11/115+16730886..16731134hypothetical protein
LOC_Os05g28660OsAffx.21375.2.S1_at1/115+16732685..16735017retrotransposon protein, putative, LINE subclass
LOC_Os05g28670NANA5+16736215..16739239hypothetical protein
LOC_Os05g28680OsAffx.20387.1.S1_x_at2/115+16740304..16746018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28690OsAffx.4459.1.S1_at11/115+16749313..16750966hypothetical protein
LOC_Os05g28700NANA5+16751664..16754297retrotransposon protein, putative, unclassified
LOC_Os05g28710Os.9610.1.S1_s_at11/115+16754545..16758942expressed protein
LOC_Os05g28720Os.24294.1.A1_at11/115+16764919..16767041pentatricopeptide, putative, expressed
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9610.1.S1_s_at--497--4811Chr05:16758184..16758208 (25 bp)
GCTCTCGCCCCTGTGTATGAAGCTG
LOC_Os05g28710
Os.9610.1.S1_s_at--1093--1591Chr05:16758204..16758228 (25 bp)
AGCTGCCACAAGATCTGTCACTGAG
LOC_Os05g28710
Os.9610.1.S1_s_at--1078--5431Chr05:16758259..16758283 (25 bp)
GAACCGGATGATGCAGACACCAAAG
LOC_Os05g28710
Os.9610.1.S1_s_at--602--7491Chr05:16758286..16758310 (25 bp)
GTGGTCTTACCTGGAGTCAATCTTA
LOC_Os05g28710
Os.9610.1.S1_s_at--695--8891Chr05:16758324..16758348 (25 bp)
TGAGATTCACCCTTTTGACATCGGC
LOC_Os05g28710
Os.9610.1.S1_s_at--765--9511Chr05:16758372..16758396 (25 bp)
TCTCTCGTTGATAGCTGAGGCGTCA
LOC_Os05g28710
Os.9610.1.S1_s_at--212--4651Chr05:16758391..16758415 (25 bp)
GCGTCAGCGGCATCATTGGCCATGA
LOC_Os05g28710
Os.9610.1.S1_s_at--511--2291Chr05:16758415..16758439 (25 bp)
AAATGAGAGATCCATCCCTGGCTGC
LOC_Os05g28710
Os.9610.1.S1_s_at--786--8331Chr05:16758434..16758458 (25 bp)
GGCTGCAACTTTGTCTTGTTCATAT
LOC_Os05g28710
Os.9610.1.S1_s_at--1157--7691Chr05:16758477..16758501 (25 bp)
GGGTCTTGGATAGGACGCTTCTCAA
LOC_Os05g28710
Os.9610.1.S1_s_at--986--5791Chr05:16758490..16758514 (25 bp)
GACGCTTCTCAAAAGCAGGCAGTTT
LOC_Os05g28710
Target Sequence 
GCTCTCGCCCCTGTGTATGAAGCTGCCACAAGATCTGTCACTGAGGACCAACCCACCACACCTGTAGCAAAACCAGAACC
GGATGATGCAGACACCAAAGATGTGGTCTTACCTGGAGTCAATCTTATATTTGATGGAGCTGAGATTCACCCTTTTGACA
TCGGCGCCTGCCTCCAAGCTCGTCAGCCTCTCTCGTTGATAGCTGAGGCGTCAGCGGCATCATTGGCCATGAAATGAGAG
ATCCATCCCTGGCTGCAACTTTGTCTTGTTCATATGTTTATTTATACAGAATTGGGTCTTGGATAGGACGCTTCTCAAAA
GCAGGCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9610.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis