Browse Element(s) Details


Os.1082.1.S1_a_at

Description gb:AK105054.1
DB_XREF= gi:32990263
TID=Os.1082.1
CNT=54
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.11 (P0475H04.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E09, full insert sequence.
FL= gb:AK105054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1984010/1160S ribosomal protein L29, putative, expressed
LOC_Os05g2875010/1160S ribosomal protein L29, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein
LOC_Os01g19870Os.48010.1.S1_at11/111+11269722..11274395expressed protein
LOC_Os01g19870Os.12462.1.S1_at2/111+11269722..11274395expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1082.1.S1_a_at--660--1312Chr05:16781692..16781716 (25 bp)
AGATGGCCAAGTCGAAGAACCACAC
NONE
Os.1082.1.S1_a_at--626--872Chr05:16781690..16781714 (25 bp)
ATGGCCAAGTCGAAGAACCACACGG
LOC_Os05g28750
Os.1082.1.S1_a_at--834--8432Chr05:16781689..16781713 (25 bp)
TGGCCAAGTCGAAGAACCACACGGC
LOC_Os05g28750
Os.1082.1.S1_a_at--350--2152Chr05:16781671..16781695 (25 bp)
ACACGGCGCACAACCAGTCGTACAA
LOC_Os05g28750
Os.1082.1.S1_a_at--695--1932Chr05:16781669..16781693 (25 bp)
ACGGCGCACAACCAGTCGTACAAGG
LOC_Os05g28750
Os.1082.1.S1_a_at--384--8392Chr05:16781667..16781691 (25 bp)
GGCGCACAACCAGTCGTACAAGGCG
LOC_Os05g28750
Os.1082.1.S1_a_at--736--2212Chr05:16781662..16781686 (25 bp)
ACAACCAGTCGTACAAGGCGCACAA
LOC_Os05g28750
Os.1082.1.S1_a_at--515--3032Chr05:16781661..16781685 (25 bp)
CAACCAGTCGTACAAGGCGCACAAG
LOC_Os05g28750
Os.1082.1.S1_a_at--774--1692Chr05:16781659..16781683 (25 bp)
ACCAGTCGTACAAGGCGCACAAGAA
LOC_Os05g28750
Os.1082.1.S1_a_at--377--4352Chr05:16781658..16781682 (25 bp)
CCAGTCGTACAAGGCGCACAAGAAC
LOC_Os05g28750
Os.1082.1.S1_a_at--438--4412Chr05:16781613..16781632 (20 bp)
GCCAGACCTCCACCAAGGGGATGGA
LOC_Os05g28750
Target Sequence 
AGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGC
CACCGCCAGACCTCCACCAAGGGGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1082.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis