Browse Element(s) Details


Os.33687.1.S1_at

Description gb:AK099496.1
DB_XREF= gi:32984705
TID=Os.33687.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.5 (P0475H04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027L08, full insert sequence.
FL= gb:AK099496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1980011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19750Os.36822.1.S1_at11/111+11205351..11206589Acidic endochitinase precursor, putative, expressed
LOC_Os01g19760Os.33857.1.S1_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.2.S1_x_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_x_at8/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_at5/111+11208631..11218178expressed protein
LOC_Os01g19770OsAffx.21963.1.S1_s_at11/111+11218630..11220431stress-inducible membrane pore protein, putative, expressed
LOC_Os01g19780NANA1+11220908..11221678hypothetical protein
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33687.1.S1_at--587--2751Chr01:11230579..11230603 (25 bp)
AAGAAAGCTCAACCTGCCCATGTCG
LOC_Os01g19800
Os.33687.1.S1_at--175--9171Chr01:11230566..11230589 (24 bp)
TGCCCATGTCGCAGTGACCATCAGA
LOC_Os01g19800
Os.33687.1.S1_at--203--10771Chr01:11229590..11229614 (25 bp)
TTGAGGTTCCCAGGCCAAGCTACGA
LOC_Os01g19800
Os.33687.1.S1_at--1036--1751Chr01:11229495..11229519 (25 bp)
ACCTGGTGCAGATCGGTGGCCGTCA
LOC_Os01g19800
Os.33687.1.S1_at--540--9691Chr01:11229348..11229372 (25 bp)
TCACGGCTGTTCTGCTGCTGAGGCA
LOC_Os01g19800
Os.33687.1.S1_at--88--8891Chr01:11229330..11229354 (25 bp)
TGAGGCATCTCGTCGCTGTCGTGAC
LOC_Os01g19800
Os.33687.1.S1_at--452--9951Chr01:11229290..11229310 (21 bp)
TACGCCTTCAGCCTCTTGACGATAT
LOC_Os01g19800
Os.33687.1.S1_at--337--10731Chr01:11229153..11229206 (25 bp)
TTGACGATATACTTGCTCCGGGCTA
LOC_Os01g19800
Os.33687.1.S1_at--256--10071Chr01:11229130..11229154 (25 bp)
TAGTGGAATCTTGCTGCCGTTCTAC
LOC_Os01g19800
Os.33687.1.S1_at--1093--9531Chr01:11229110..11229134 (25 bp)
TCTACGTCGTCATGAGGCTCATCTC
LOC_Os01g19800
Os.33687.1.S1_at--888--9591Chr01:11229092..11229116 (25 bp)
TCATCTCCACGGTTCAGAAGGGTCA
LOC_Os01g19800
Target Sequence 
AAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTGAGGTTCCCAGGCCAAGCTACGAGCCGGAGGA
CACGCCGTTGATCGGCGAGCAGGATTACGCCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCAGATCGGTGG
CCGTCACGTTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTC
AGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGT
TCAGAAGGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis