Browse Element(s) Details


OsAffx.21963.1.S1_s_at

Description tigr:9629.m01932
TID=OsAffx.21963.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stress-inducible membrane pore protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1977011/11stress-inducible membrane pore protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19730NANA1+11195715..11196216hypothetical protein
LOC_Os01g19740Os.7872.1.S1_at11/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19740Os.10732.1.S1_s_at1/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19750Os.36822.1.S1_at11/111+11205351..11206589Acidic endochitinase precursor, putative, expressed
LOC_Os01g19760Os.33857.1.S1_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.2.S1_x_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_x_at8/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_at5/111+11208631..11218178expressed protein
LOC_Os01g19770OsAffx.21963.1.S1_s_at11/111+11218630..11220431stress-inducible membrane pore protein, putative, expressed
LOC_Os01g19780NANA1+11220908..11221678hypothetical protein
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21963.1.S1_s_at--213--3051Chr01:11219318..11219342 (25 bp)
AATCCGCTGGGAAGGAGGCTTTCCA
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--204--691Chr01:11219008..11219139 (25 bp)
ATGACTGGAAGAACAGTGCGGTCGC
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--1137--7611Chr01:11218948..11218972 (25 bp)
GGGACACCGGGAACGCCGACCACAT
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--433--5851Chr01:11218931..11218955 (25 bp)
GACCACATGGTCCATTTCGCCATCA
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--876--9091Chr01:11218876..11218900 (25 bp)
TGCTCTCCGGCATATACTGATCGAG
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--192--10191Chr01:11218864..11218888 (25 bp)
TATACTGATCGAGCCTGAAGTGCGG
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--106--5591Chr01:11218812..11218836 (25 bp)
GAAATGTTCTCATCAGATGCACCCA
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--247--6331Chr01:11218797..11218821 (25 bp)
GATGCACCCATGATGTGTAGTCCCC
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--280--9311Chr01:11218771..11218795 (25 bp)
TCGCCGCGTTCCTTTTATTTGTCTT
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--154--8711Chr01:11218752..11218776 (25 bp)
TGTCTTCCTTCGAAACAATCCCAAT
LOC_Os01g19770
OsAffx.21963.1.S1_s_at--57--3051Chr01:11218736..11218760 (25 bp)
AATCCCAATGTTAGTGTAAGCTAGC
LOC_Os01g19770
Target Sequence 
AATCCGCTGGGAAGGAGGCTTTCCAGTGGGGATTGGCGGCCGGGGTGTACTCTGGACTGACGTACGGCCTGAGAGAGGCC
AGAGGGTGCCATGACTGGAAGAACAGTGCGGTCGCCGGCGCGATCGCTGGCGTGGCGGTGGCGCTGACGGGGGACACCGG
GAACGCCGACCACATGGTCCATTTCGCCATCACCGGCGCCGCGCTTTCCAGTGCGGCGAGCCTGCTCTCCGGCATATACT
GATCGAGCCTGAAGTGCGGGAGGGGTTTAGGATTATGGATTTGTAGGAAATGTTCTCATCAGATGCACCCATGATGTGTA
GTCCCCGTCGCCGCGTTCCTTTTATTTGTCTTCCTTCGAAACAATCCCAATGTTAGTGTAAGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21963.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis