Browse Element(s) Details


Os.7872.1.S1_at

Description gb:AK058929.1
DB_XREF= gi:32968947
TID=Os.7872.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.7872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU078264(S21150)~unknown protein (P0035H10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-C09, full insert sequence.
FL= gb:AK066266.1 gb:AK102013.1 gb:AK058929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1974011/11chloroplast protein 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19710OsAffx.23366.2.S1_s_at2/111+11173902..11177382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19710OsAffx.23366.1.S1_at1/111+11173902..11177382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19720Os.46314.3.S1_at3/111+11179320..11182213transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19730NANA1+11195715..11196216hypothetical protein
LOC_Os01g19740Os.7872.1.S1_at11/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19740Os.10732.1.S1_s_at1/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19750Os.36822.1.S1_at11/111+11205351..11206589Acidic endochitinase precursor, putative, expressed
LOC_Os01g19760Os.33857.1.S1_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.2.S1_x_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_x_at8/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_at5/111+11208631..11218178expressed protein
LOC_Os01g19770OsAffx.21963.1.S1_s_at11/111+11218630..11220431stress-inducible membrane pore protein, putative, expressed
LOC_Os01g19780NANA1+11220908..11221678hypothetical protein
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0018316biological_processpeptide cross-linking via L-cystine
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0009570cellular_componentchloroplast stroma
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7872.1.S1_at--286--4531Chr01:11199867..11199891 (25 bp)
GCCGCCGGACATCTCGGACAAGATG
LOC_Os01g19740
Os.7872.1.S1_at--74--471Chr01:11199857..11199881 (25 bp)
ATCTCGGACAAGATGTCGGAGAGCA
LOC_Os01g19740
Os.7872.1.S1_at--89--8731Chr01:11199844..11199868 (25 bp)
TGTCGGAGAGCATCGACAAGGCGAA
LOC_Os01g19740
Os.7872.1.S1_at--986--7271Chr01:11199663..11199687 (25 bp)
GTGCCGCACCTACGACAACTGATTC
LOC_Os01g19740
Os.7872.1.S1_at--1029--5611Chr01:11199650..11199674 (25 bp)
GACAACTGATTCTTACCATTATATG
LOC_Os01g19740
Os.7872.1.S1_at--1034--10111Chr01:11199629..11199653 (25 bp)
TATGTTTGCTAATCTCTCTGTAATT
LOC_Os01g19740
Os.7872.1.S1_at--24--5531Chr01:11199585..11199609 (25 bp)
GAAAAGATTATTTGTCGTAGAAGAC
LOC_Os01g19740
Os.7872.1.S1_at--800--6811Chr01:11199496..11199520 (25 bp)
GTTTTTTACACTTGTTTGTCTGGAT
LOC_Os01g19740
Os.7872.1.S1_at--1158--7171Chr01:11199479..11199503 (25 bp)
GTCTGGATGAATTTGTATGGAACTT
LOC_Os01g19740
Os.7872.1.S1_at--375--6931Chr01:11199465..11199489 (25 bp)
GTATGGAACTTTTCTGCTTGATAAT
LOC_Os01g19740
Os.7872.1.S1_at--113--9491Chr01:11199453..11199477 (25 bp)
TCTGCTTGATAATTTTCGCATGTGT
LOC_Os01g19740
Target Sequence 
GCCGCCGGACATCTCGGACAAGATGTCGGAGAGCATCGACAAGGCGAAGGAGGCGTGCGCNGGAGGACACGGCGAGCGGC
GAGTGCGCGGCGGCGTGGGACGAGGTGGAGGAGCTGAGCGCGGCGGCGAGCCACGCGCGCGACAAGCTCAAGGAGACCTC
CGACCCGCTCGAGGCCTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGACAACTGATTCTTACCATTAT
ATGTTTGCTAATCTCTCTGTAATTAATTATAAGTTACTGGGTTGAAAAGATTATTTGTCGTAGAAGACAGAGGGGAGTTT
GGTGGAATGGTGGTATTTACGGATAGTTCAAGGGGGAAATGGGAAAAAAAAGGTTTTTTACACTTGTTTGTCTGGATGAA
TTTGTATGGAACTTTTCTGCTTGATAATTTTCGCATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis